Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHM52_RS09855 Genome accession   NZ_CP109937
Coordinates   1972368..1973009 (-) Length   213 a.a.
NCBI ID   WP_024394813.1    Uniprot ID   -
Organism   Streptococcus suis strain TRG6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1967368..1978009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM52_RS09830 (OHM52_09830) comFA/cflA 1967522..1968814 (-) 1293 WP_024415030.1 DEAD/DEAH box helicase Machinery gene
  OHM52_RS09835 (OHM52_09835) - 1968871..1969503 (+) 633 WP_015646510.1 YigZ family protein -
  OHM52_RS09840 (OHM52_09840) cysK 1969593..1970519 (+) 927 WP_012774985.1 cysteine synthase A -
  OHM52_RS09845 (OHM52_09845) - 1970545..1970916 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  OHM52_RS09850 (OHM52_09850) - 1970918..1972318 (-) 1401 WP_172001243.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  OHM52_RS09855 (OHM52_09855) vraR 1972368..1973009 (-) 642 WP_024394813.1 response regulator transcription factor Regulator
  OHM52_RS09860 (OHM52_09860) - 1972981..1973997 (-) 1017 WP_002937028.1 sensor histidine kinase -
  OHM52_RS09865 (OHM52_09865) liaF 1973994..1974653 (-) 660 WP_225533322.1 cell wall-active antibiotics response protein LiaF -
  OHM52_RS11535 - 1975110..1975382 (-) 273 WP_395387773.1 PASTA domain-containing protein -
  OHM52_RS09870 (OHM52_09870) pknB 1975446..1977104 (-) 1659 Protein_1905 Stk1 family PASTA domain-containing Ser/Thr kinase -
  OHM52_RS09875 (OHM52_09875) - 1977104..1977841 (-) 738 WP_012774983.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23804.39 Da        Isoelectric Point: 4.8970

>NTDB_id=682301 OHM52_RS09855 WP_024394813.1 1972368..1973009(-) (vraR) [Streptococcus suis strain TRG6]
MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVIVMDLVMPKMTGVEATLALLKEWPQAQI
VILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=682301 OHM52_RS09855 WP_024394813.1 1972368..1973009(-) (vraR) [Streptococcus suis strain TRG6]
ATGAATACGATTCGAGTGATGCTGGTTGACGACCATGAGATGGTTCGTCTAGGATTGAAAAGTTACTTAAATTTACAGCC
AGATGTTGAAGTAGTTGCAGAAGCTAGTGATGGCGAGGAAGGTTTGGCTAAAGCATTAGAGGTTAAACCCGATGTTATAG
TGATGGACTTGGTTATGCCCAAGATGACTGGCGTAGAAGCAACCCTGGCCTTGCTGAAGGAATGGCCGCAAGCGCAGATT
GTCATCCTGACCTCCTACCTAGATAATGAAAAAATCTATCCTGTGCTGGAAGCAGGAGCTCGTGGTTATATGTTGAAAAC
GTCAAGTGCTGACGAAATCTTAGCAGCCATCCGCAAGGTAGCTCTTGGAGAATATGCTATTGAGACAGAAGTAGAGAAAA
AAGTAGAGCACCATAAACGCCACCCAGATTTACATGATGACTTGACAGCTCGTGAACGCGAAATCTTGACGCTGTTAGCC
AAGGGATATGATAATCAACGAATTGCAGATGAGTCCTTCATATCCTTAAAAACTGTTAAGACCCATGTTTCCAATATCTT
ATCCAAACTAGCTGTTAGCGATCGTACTCAAGCAGTTGTTTATGCTTTCCAGCATGGTTTGGTGGCGCAAGAGGACCAAT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

55.072

97.183

0.535
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.408