Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   OH129_RS01650 Genome accession   NZ_CP109819
Coordinates   327163..327750 (+) Length   195 a.a.
NCBI ID   WP_002810825.1    Uniprot ID   -
Organism   Campylobacter coli strain CC21NB04a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322163..332750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH129_RS01635 (OH129_01635) ctsR 324870..325181 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  OH129_RS01640 (OH129_01640) ctsD 325159..326577 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OH129_RS01645 (OH129_01645) ctsP 326570..327166 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  OH129_RS01650 (OH129_01650) ctsX 327163..327750 (+) 588 WP_002810825.1 CDC27 family protein Machinery gene
  OH129_RS01655 (OH129_01655) ctsE 327743..329305 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  OH129_RS01660 (OH129_01660) ctsF 329292..330467 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  OH129_RS01665 (OH129_01665) - 330464..331228 (-) 765 WP_002781157.1 TSUP family transporter -
  OH129_RS01670 (OH129_01670) - 331231..331995 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23446.85 Da        Isoelectric Point: 5.5246

>NTDB_id=679845 OH129_RS01650 WP_002810825.1 327163..327750(+) (ctsX) [Campylobacter coli strain CC21NB04a]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEYKKTLNWQITQAQIANEKNKILQER
LSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSWVLF
AKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=679845 OH129_RS01650 WP_002810825.1 327163..327750(+) (ctsX) [Campylobacter coli strain CC21NB04a]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTACAAGAAAGA
TTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGATTTTAAATAT
AAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATTATGAAAACA
AAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGGGTTTTATTT
GCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTATGGCTTGAT
TGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(113-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

54.487

80

0.436