Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | O77CONTIG1_RS21715 | Genome accession | NZ_AP017367 |
| Coordinates | 5134691..5135062 (-) | Length | 123 a.a. |
| NCBI ID | WP_068515072.1 | Uniprot ID | - |
| Organism | Leptolyngbya sp. O-77 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5129691..5140062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O77CONTIG1_RS21690 (O77CONTIG1_04615) | nblS | 5129852..5131918 (+) | 2067 | WP_286132458.1 | two-component system sensor histidine kinase NblS | - |
| O77CONTIG1_RS21695 (O77CONTIG1_04616) | mutY | 5132020..5133099 (-) | 1080 | WP_068515061.1 | A/G-specific adenine glycosylase | - |
| O77CONTIG1_RS21700 (O77CONTIG1_04617) | - | 5133220..5133552 (-) | 333 | WP_068515063.1 | DUF760 domain-containing protein | - |
| O77CONTIG1_RS21705 (O77CONTIG1_04618) | - | 5133681..5134070 (-) | 390 | WP_068515068.1 | RidA family protein | - |
| O77CONTIG1_RS21710 (O77CONTIG1_04619) | - | 5134106..5134537 (-) | 432 | WP_068515070.1 | NUDIX domain-containing protein | - |
| O77CONTIG1_RS21715 (O77CONTIG1_04620) | pilH | 5134691..5135062 (-) | 372 | WP_068515072.1 | PleD family two-component system response regulator | Machinery gene |
| O77CONTIG1_RS21720 (O77CONTIG1_04621) | psbV | 5135575..5136066 (+) | 492 | WP_068515074.1 | photosystem II cytochrome c-550 | - |
| O77CONTIG1_RS21725 (O77CONTIG1_04622) | - | 5136449..5137228 (+) | 780 | WP_068515077.1 | WD40 repeat domain-containing protein | - |
| O77CONTIG1_RS21730 (O77CONTIG1_04623) | - | 5137308..5137895 (+) | 588 | WP_068515080.1 | DUF924 family protein | - |
| O77CONTIG1_RS21735 (O77CONTIG1_04624) | - | 5138047..5138754 (+) | 708 | WP_068515083.1 | N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 123 a.a. Molecular weight: 14002.33 Da Isoelectric Point: 5.7159
>NTDB_id=67767 O77CONTIG1_RS21715 WP_068515072.1 5134691..5135062(-) (pilH) [Leptolyngbya sp. O-77]
MRTVLIVDDSQTLRQMLLELLQGNGMQVMEATNGIEAKAMIQSNAPDLVITDLIMPEMNGYELCRWIKNDPAAQKIPVLI
CSTKSEEFDRYWGMKQGADAYITKPFHPPELLKTVRQLLQGHR
MRTVLIVDDSQTLRQMLLELLQGNGMQVMEATNGIEAKAMIQSNAPDLVITDLIMPEMNGYELCRWIKNDPAAQKIPVLI
CSTKSEEFDRYWGMKQGADAYITKPFHPPELLKTVRQLLQGHR
Nucleotide
Download Length: 372 bp
>NTDB_id=67767 O77CONTIG1_RS21715 WP_068515072.1 5134691..5135062(-) (pilH) [Leptolyngbya sp. O-77]
ATGAGAACCGTGTTGATTGTGGACGACAGCCAAACGTTGCGGCAAATGCTTTTGGAATTGCTTCAGGGCAACGGAATGCA
GGTCATGGAGGCTACCAACGGCATTGAAGCCAAGGCAATGATCCAATCCAACGCACCGGATCTGGTCATCACTGACCTGA
TCATGCCGGAGATGAATGGCTACGAGCTTTGTCGCTGGATCAAAAACGACCCCGCCGCTCAAAAAATTCCCGTCCTCATC
TGCTCGACTAAAAGCGAAGAATTTGACCGCTACTGGGGCATGAAGCAGGGCGCAGATGCCTACATCACTAAGCCTTTTCA
CCCGCCAGAGTTGCTCAAGACCGTCAGGCAACTGCTCCAGGGCCACCGCTAG
ATGAGAACCGTGTTGATTGTGGACGACAGCCAAACGTTGCGGCAAATGCTTTTGGAATTGCTTCAGGGCAACGGAATGCA
GGTCATGGAGGCTACCAACGGCATTGAAGCCAAGGCAATGATCCAATCCAACGCACCGGATCTGGTCATCACTGACCTGA
TCATGCCGGAGATGAATGGCTACGAGCTTTGTCGCTGGATCAAAAACGACCCCGCCGCTCAAAAAATTCCCGTCCTCATC
TGCTCGACTAAAAGCGAAGAATTTGACCGCTACTGGGGCATGAAGCAGGGCGCAGATGCCTACATCACTAAGCCTTTTCA
CCCGCCAGAGTTGCTCAAGACCGTCAGGCAACTGCTCCAGGGCCACCGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
54.167 |
97.561 |
0.528 |
| pilG | Acinetobacter baumannii strain A118 |
42.105 |
92.683 |
0.39 |