Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OHA59_RS48285 Genome accession   NZ_CP109333
Coordinates   10363969..10364169 (-) Length   66 a.a.
NCBI ID   WP_406423978.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01589     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10358969..10369169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA59_RS48275 (OHA59_48330) - 10360233..10361000 (-) 768 WP_406423982.1 alpha/beta fold hydrolase -
  OHA59_RS48280 (OHA59_48335) - 10361086..10363833 (-) 2748 WP_406423980.1 AAA family ATPase -
  OHA59_RS48285 (OHA59_48340) qstR 10363969..10364169 (-) 201 WP_406423978.1 response regulator transcription factor Regulator
  OHA59_RS48290 (OHA59_48355) - 10365006..10365347 (-) 342 WP_406423976.1 GNAT family N-acetyltransferase -
  OHA59_RS48295 (OHA59_48360) - 10365358..10366331 (-) 974 Protein_9559 pirin family protein -
  OHA59_RS48300 (OHA59_48365) - 10366590..10367321 (-) 732 WP_406423972.1 alpha/beta fold hydrolase -
  OHA59_RS48305 (OHA59_48370) - 10367899..10368735 (+) 837 WP_406423970.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 66 a.a.        Molecular weight: 7517.60 Da        Isoelectric Point: 11.1540

>NTDB_id=674459 OHA59_RS48285 WP_406423978.1 10363969..10364169(-) (qstR) [Streptomyces sp. NBC_01589]
MWPELTASEVSVIRLVAQGLTNRQAAERLAISPHTVSSHLRRAFTKLDITSRVELRRLVNSREYGE

Nucleotide


Download         Length: 201 bp        

>NTDB_id=674459 OHA59_RS48285 WP_406423978.1 10363969..10364169(-) (qstR) [Streptomyces sp. NBC_01589]
GTGTGGCCGGAGCTGACCGCCTCGGAGGTCTCGGTGATCCGGCTGGTGGCGCAAGGGCTGACGAACCGGCAGGCCGCGGA
GCGCCTCGCGATCTCACCGCACACCGTGAGCTCACACCTGCGGCGTGCGTTCACCAAGCTCGACATCACCTCTCGGGTCG
AACTGCGCCGTCTGGTAAATTCACGCGAGTACGGAGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(5-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

43.103

87.879

0.379