Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KNN_RS16865 Genome accession   NZ_AP014864
Coordinates   3299524..3299802 (-) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3294524..3304802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN_RS16850 (KNN_03483) - 3296013..3296672 (-) 660 WP_017658008.1 CatB-related O-acetyltransferase -
  KNN_RS16855 (KNN_03484) - 3296926..3297684 (-) 759 WP_000347981.1 TSUP family transporter -
  KNN_RS16860 (KNN_03485) - 3297752..3299002 (-) 1251 WP_060852131.1 hypothetical protein -
  KNN_RS16865 (KNN_03486) abrB 3299524..3299802 (-) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KNN_RS16870 (KNN_03487) - 3299943..3300821 (-) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  KNN_RS16875 (KNN_03488) - 3301196..3301447 (+) 252 WP_048538843.1 helix-turn-helix transcriptional regulator -
  KNN_RS16880 (KNN_03489) - 3301971..3303152 (-) 1182 WP_060852132.1 agmatine deiminase family protein -
  KNN_RS16885 (KNN_03490) - 3303439..3304041 (-) 603 WP_000517271.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=67184 KNN_RS16865 WP_000842216.1 3299524..3299802(-) (abrB) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=67184 KNN_RS16865 WP_000842216.1 3299524..3299802(-) (abrB) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment