Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MQC90_RS08835 Genome accession   NZ_CP094361
Coordinates   1689717..1690496 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain NCIB 3610     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684717..1695496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS08815 trmFO 1685410..1686717 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MQC90_RS08820 xerC 1686785..1687699 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  MQC90_RS08825 clpQ 1687712..1688257 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  MQC90_RS08830 hslU 1688265..1689677 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  MQC90_RS08835 codY 1689717..1690496 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MQC90_RS08840 flgB 1690876..1691265 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  MQC90_RS08845 flgC 1691265..1691717 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  MQC90_RS08850 fliE 1691728..1692048 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  MQC90_RS08855 fliF 1692094..1693704 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  MQC90_RS08860 fliG 1693717..1694733 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  MQC90_RS08865 fliH 1694726..1695478 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=669277 MQC90_RS08835 WP_003220850.1 1689717..1690496(+) (codY) [Bacillus subtilis strain NCIB 3610]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=669277 MQC90_RS08835 WP_003220850.1 1689717..1690496(+) (codY) [Bacillus subtilis strain NCIB 3610]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment