Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MRB56_RS00605 Genome accession   NZ_CP094345
Coordinates   121060..122565 (+) Length   501 a.a.
NCBI ID   WP_413615608.1    Uniprot ID   -
Organism   Halomonas cupida strain J9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 116060..127565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRB56_RS00570 (MRB56_00555) - 116695..117099 (-) 405 WP_413615605.1 VOC family protein -
  MRB56_RS00575 (MRB56_00560) - 117203..117508 (+) 306 WP_413615606.1 putative quinol monooxygenase -
  MRB56_RS00580 (MRB56_00565) - 117613..117825 (+) 213 WP_073437250.1 DUF3820 family protein -
  MRB56_RS00585 (MRB56_00570) glnK 117891..118229 (-) 339 WP_073437251.1 P-II family nitrogen regulator -
  MRB56_RS00590 (MRB56_00575) - 118648..119898 (-) 1251 WP_073436708.1 ammonium transporter -
  MRB56_RS00595 (MRB56_00580) - 119977..120315 (-) 339 WP_073436707.1 P-II family nitrogen regulator -
  MRB56_RS00600 (MRB56_00585) - 120636..120938 (+) 303 WP_413615607.1 accessory factor UbiK family protein -
  MRB56_RS00605 (MRB56_00590) comM 121060..122565 (+) 1506 WP_413615608.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MRB56_RS00610 (MRB56_00595) - 122613..123950 (-) 1338 WP_413616635.1 Na+/H+ antiporter family protein -
  MRB56_RS00615 (MRB56_00600) - 124616..125788 (-) 1173 WP_413615609.1 winged helix-turn-helix domain-containing protein -
  MRB56_RS00620 (MRB56_00605) - 125965..127167 (-) 1203 WP_073436701.1 ROK family protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53643.45 Da        Isoelectric Point: 6.8524

>NTDB_id=669124 MRB56_RS00605 WP_413615608.1 121060..122565(+) (comM) [Halomonas cupida strain J9]
MTLAIITTRAGLGLEAPEVHVEAHLANGLPGMTLVGLPEAAVKESRERVRSALTTSGFEFPLRRITLNLAPADLPKEGGR
FDLPIALGLLVASGQLPAEALEGIECAGELALDGHLRPVTGMLPFALATRRAGRRVIVPQANAAEAALAGGLEVLPARHL
VDVVAHLAGHTLITPWQADDPAPSLSETPDLADVRGQHQARRALEVAAAGGHNLLFAGPPGTGKTLLASRLPGILPALDE
DEILEVAAIRSVSGLAIEQDWGRRPFRAPHHTASAVALVGGGSRPRPGEISLAHLGVLFLDELPEFSRHVLEVMREPMES
GEIHISRASHERRYPARFQLVAAMNPCPCGHLGDPRQACVCTASQIQRYQSRLSGPLLDRIDLQVEVPALKASQLTSRES
GESTESVRERVMAARQRQAARGGINAHLSGRQLDDACALGATDRAWLAETLDRLALSARAYHRVLRVALTLADLADLERP
SREQLIEAISYRQLDRMLKGG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=669124 MRB56_RS00605 WP_413615608.1 121060..122565(+) (comM) [Halomonas cupida strain J9]
ATGACACTGGCGATCATCACCACCCGGGCCGGGCTGGGGCTGGAAGCCCCCGAGGTTCATGTTGAAGCCCATCTGGCCAA
TGGCCTGCCGGGGATGACCCTGGTGGGTCTGCCCGAGGCTGCGGTCAAGGAAAGTCGCGAGCGAGTCCGCAGCGCACTGA
CCACCTCGGGATTCGAGTTTCCGCTACGCCGTATCACTCTGAATCTGGCGCCCGCCGACTTGCCCAAGGAAGGCGGGCGT
TTTGACCTGCCGATTGCTCTGGGGCTGCTGGTGGCTTCCGGGCAACTACCCGCGGAAGCGCTGGAAGGCATTGAATGTGC
CGGGGAGCTGGCATTGGACGGCCATCTACGACCGGTCACCGGCATGCTGCCCTTCGCCCTGGCGACTCGACGTGCCGGAC
GGCGTGTCATCGTTCCTCAAGCCAATGCCGCCGAGGCCGCGTTGGCCGGTGGTCTGGAAGTGCTCCCGGCTCGTCACCTG
GTGGATGTTGTTGCCCATCTTGCCGGTCACACCCTGATCACTCCCTGGCAGGCCGATGACCCTGCACCATCATTGAGCGA
AACGCCGGATCTGGCTGATGTACGTGGCCAGCATCAGGCACGACGTGCGCTGGAAGTGGCGGCGGCTGGCGGCCACAATC
TGCTGTTTGCCGGCCCTCCGGGCACCGGCAAGACACTGCTGGCCAGTCGTCTGCCGGGGATTCTGCCGGCGCTGGACGAA
GACGAGATCCTCGAGGTGGCTGCCATACGTTCGGTCAGTGGCCTGGCGATCGAGCAGGACTGGGGACGGCGTCCCTTTCG
TGCCCCTCACCATACCGCCAGTGCTGTGGCTCTGGTCGGCGGAGGCAGTCGCCCGCGCCCCGGGGAGATTTCGCTGGCCC
ACCTGGGGGTGTTGTTTCTCGATGAACTGCCCGAGTTCAGCCGCCATGTCCTCGAAGTCATGCGTGAGCCGATGGAGTCC
GGCGAGATTCATATTTCCCGTGCCAGCCATGAGCGACGCTATCCTGCGCGTTTCCAGTTGGTTGCGGCCATGAATCCCTG
CCCCTGCGGGCACCTGGGGGACCCTCGTCAGGCGTGCGTCTGCACTGCCAGCCAGATTCAGCGCTATCAGTCGCGCCTAT
CGGGGCCGCTGCTGGATCGTATTGATCTGCAGGTCGAAGTGCCGGCACTCAAGGCCAGTCAGTTGACGTCCCGCGAGTCG
GGAGAGAGTACCGAGTCGGTGCGGGAGCGGGTCATGGCAGCACGTCAGCGCCAGGCCGCTCGCGGCGGTATCAATGCCCA
TTTGAGTGGGCGACAGCTTGATGACGCCTGCGCCCTCGGTGCCACTGACCGTGCCTGGTTGGCCGAAACCCTTGATCGTC
TGGCGCTTTCCGCCCGCGCCTATCACCGTGTACTGCGAGTCGCCCTGACTCTCGCCGATCTTGCCGACCTGGAGAGACCC
TCCCGCGAACAATTGATCGAGGCCATCAGTTATCGGCAGCTGGATCGGATGCTCAAGGGAGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.98

100

0.551
  comM Vibrio campbellii strain DS40M4

53.386

100

0.535
  comM Glaesserella parasuis strain SC1401

51.772

100

0.525
  comM Haemophilus influenzae Rd KW20

50.888

100

0.515
  comM Legionella pneumophila str. Paris

49.2

99.8

0.491
  comM Legionella pneumophila strain ERS1305867

49.2

99.8

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.473

99.202

0.451

Multiple sequence alignment