Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF93_RS05480 Genome accession   NZ_CP094178
Coordinates   1141272..1141676 (-) Length   134 a.a.
NCBI ID   WP_220876816.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136272..1146676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF93_RS05435 (MPF93_05435) - 1136404..1137528 (-) 1125 WP_245073347.1 hypothetical protein -
  MPF93_RS05440 (MPF93_05440) - 1137518..1138303 (-) 786 WP_245073349.1 hypothetical protein -
  MPF93_RS05445 (MPF93_05445) - 1138303..1138690 (-) 388 Protein_1062 DUF1294 domain-containing protein -
  MPF93_RS05450 (MPF93_05450) - 1139024..1139185 (-) 162 WP_014536434.1 lysozyme -
  MPF93_RS05455 (MPF93_05455) - 1139280..1139654 (-) 375 WP_342370104.1 lysozyme -
  MPF93_RS05460 (MPF93_05460) - 1139710..1140270 (-) 561 WP_154568960.1 hypothetical protein -
  MPF93_RS05465 (MPF93_05465) - 1140254..1140592 (-) 339 WP_000699911.1 hypothetical protein -
  MPF93_RS07735 - 1140781..1141154 (-) 374 Protein_1067 tetratricopeptide repeat protein -
  MPF93_RS05480 (MPF93_05480) dprB 1141272..1141676 (-) 405 WP_220876816.1 Holliday junction resolvase RuvX Machinery gene
  MPF93_RS05485 (MPF93_05485) dprA 1141673..1142473 (-) 801 WP_245073357.1 DNA-processing protein DprA Machinery gene
  MPF93_RS05490 (MPF93_05490) minE 1142485..1142718 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF93_RS05495 (MPF93_05495) minD 1142715..1143521 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPF93_RS05500 (MPF93_05500) ilvC 1143545..1144537 (-) 993 WP_245073359.1 ketol-acid reductoisomerase -
  MPF93_RS05510 (MPF93_05510) - 1144786..1145568 (+) 783 WP_245073361.1 NAD+ synthase -
  MPF93_RS05515 (MPF93_05515) - 1145565..1146503 (+) 939 WP_245073363.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15295.77 Da        Isoelectric Point: 9.1725

>NTDB_id=668059 MPF93_RS05480 WP_220876816.1 1141272..1141676(-) (dprB) [Helicobacter pylori strain Hpfe060]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=668059 MPF93_RS05480 WP_220876816.1 1141272..1141676(-) (dprB) [Helicobacter pylori strain Hpfe060]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATTGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGACTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.992

99.254

0.963

Multiple sequence alignment