Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG293_RS01975 Genome accession   NZ_CP108867
Coordinates   479285..479968 (-) Length   227 a.a.
NCBI ID   WP_405996993.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00829     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 474285..484968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG293_RS01950 (OG293_01945) - 474974..475606 (-) 633 WP_405996988.1 hypothetical protein -
  OG293_RS01955 (OG293_01950) - 475717..476535 (-) 819 WP_405996989.1 RimK family alpha-L-glutamate ligase -
  OG293_RS01960 (OG293_01955) - 476532..477440 (-) 909 WP_405996990.1 RimK family alpha-L-glutamate ligase -
  OG293_RS01965 (OG293_01960) - 477694..478107 (+) 414 WP_405996991.1 VOC family protein -
  OG293_RS01970 (OG293_01965) - 478388..478783 (+) 396 WP_405996992.1 hypothetical protein -
  OG293_RS01975 (OG293_01970) dinR/lexA 479285..479968 (-) 684 WP_405996993.1 transcriptional repressor LexA Regulator
  OG293_RS01980 (OG293_01975) - 480236..480685 (-) 450 WP_405996994.1 hypothetical protein -
  OG293_RS01985 (OG293_01980) - 480682..481599 (-) 918 WP_405996995.1 NAD-dependent epimerase/dehydratase family protein -
  OG293_RS01990 (OG293_01985) - 481596..482462 (-) 867 WP_405996996.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24431.97 Da        Isoelectric Point: 9.8238

>NTDB_id=667761 OG293_RS01975 WP_405996993.1 479285..479968(-) (dinR/lexA) [Streptomyces sp. NBC_00829]
MDTAESAGPGRPPGVRVGADGLTGRQSAIVAFIEEAVSRRGYPPSMREIGAAVKLKSTSSVAHQLMTLERKGFIYRDPHT
PRAYRVRKPWADQDATAPARAHASTAQVPLLGRIAAGIPILAEEAVEDVFALPRQLVGEGELFALTVVGDSMIDASIRDG
DIVTVRRQQSADHGDIVAALLDGEATVKRLRREAGQVWLMPENRAYQPIPGNAAQILGKVVALLRRF

Nucleotide


Download         Length: 684 bp        

>NTDB_id=667761 OG293_RS01975 WP_405996993.1 479285..479968(-) (dinR/lexA) [Streptomyces sp. NBC_00829]
ATGGATACAGCCGAGTCGGCAGGGCCGGGGCGTCCGCCGGGTGTACGGGTCGGCGCCGACGGACTGACCGGACGGCAGTC
GGCCATCGTCGCCTTCATCGAGGAAGCGGTCTCCCGCAGGGGATATCCGCCGTCGATGCGGGAGATCGGCGCGGCCGTCA
AGCTCAAAAGCACGTCCTCGGTCGCGCACCAGCTGATGACGCTGGAGCGCAAGGGATTCATCTACCGGGATCCGCACACG
CCTCGGGCCTACCGTGTCCGCAAGCCCTGGGCCGATCAGGACGCAACAGCGCCCGCACGCGCACACGCGTCGACGGCGCA
GGTGCCGCTGCTGGGCCGTATCGCCGCCGGCATCCCGATCCTCGCCGAGGAAGCCGTCGAGGACGTGTTCGCGCTGCCCC
GGCAACTGGTCGGAGAGGGCGAGCTGTTCGCGCTGACCGTGGTAGGGGACAGCATGATCGATGCTTCGATCCGTGACGGT
GACATCGTCACCGTCCGACGCCAGCAGTCGGCCGATCACGGTGACATCGTCGCTGCGCTCCTCGACGGGGAGGCGACGGT
GAAACGGCTCCGCCGGGAGGCCGGGCAGGTGTGGCTGATGCCGGAGAACCGGGCGTACCAGCCGATCCCGGGCAACGCGG
CGCAGATCCTGGGCAAAGTAGTGGCGTTGCTTCGACGCTTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(109-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.175

90.749

0.401