Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG17_RS07155 Genome accession   NZ_CP094107
Coordinates   1508258..1508539 (-) Length   93 a.a.
NCBI ID   WP_120835798.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe074     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1503258..1513539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG17_RS07135 (MPG17_07135) - 1503969..1505309 (-) 1341 WP_245017813.1 hypothetical protein -
  MPG17_RS07145 (MPG17_07145) comB4 1505624..1507993 (-) 2370 WP_245017814.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG17_RS07150 (MPG17_07150) comB3 1507995..1508258 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG17_RS07155 (MPG17_07155) comB2 1508258..1508539 (-) 282 WP_120835798.1 TrbC/VirB2 family protein Machinery gene
  MPG17_RS07160 (MPG17_07160) - 1508684..1509511 (-) 828 WP_245017815.1 DUF5718 family protein -
  MPG17_RS07165 (MPG17_07165) - 1509602..1510654 (-) 1053 WP_245017816.1 MnmA/TRMU family protein -
  MPG17_RS07170 (MPG17_07170) dnaG 1510651..1512330 (-) 1680 WP_245017817.1 DNA primase -
  MPG17_RS07175 (MPG17_07175) groES 1512604..1512960 (+) 357 WP_180412724.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10569.84 Da        Isoelectric Point: 9.1450

>NTDB_id=666950 MPG17_RS07155 WP_120835798.1 1508258..1508539(-) (comB2) [Helicobacter pylori strain Hpfe074]
MSTHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666950 MPG17_RS07155 WP_120835798.1 1508258..1508539(-) (comB2) [Helicobacter pylori strain Hpfe074]
ATGTCCACTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978