Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG14_RS07235 Genome accession   NZ_CP094102
Coordinates   1515552..1515815 (-) Length   87 a.a.
NCBI ID   WP_245053921.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe078     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510552..1520815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG14_RS07220 (MPG14_07220) - 1511525..1512865 (-) 1341 WP_180427644.1 hypothetical protein -
  MPG14_RS07230 (MPG14_07230) comB4 1513187..1515550 (-) 2364 WP_245053919.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG14_RS07235 (MPG14_07235) comB3 1515552..1515815 (-) 264 WP_245053921.1 competence protein ComB Machinery gene
  MPG14_RS07240 (MPG14_07240) comB2 1515815..1516096 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG14_RS07245 (MPG14_07245) - 1516241..1517068 (-) 828 WP_050835312.1 DUF5718 family protein -
  MPG14_RS07250 (MPG14_07250) - 1517157..1518209 (-) 1053 WP_000721160.1 MnmA/TRMU family protein -
  MPG14_RS07255 (MPG14_07255) dnaG 1518206..1519885 (-) 1680 WP_245053923.1 DNA primase -
  MPG14_RS07260 (MPG14_07260) groES 1520159..1520515 (+) 357 WP_000671947.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=666886 MPG14_RS07235 WP_245053921.1 1515552..1515815(-) (comB3) [Helicobacter pylori strain Hpfe078]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFVLLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666886 MPG14_RS07235 WP_245053921.1 1515552..1515815(-) (comB3) [Helicobacter pylori strain Hpfe078]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTGTTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGAT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966