Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG64_RS07165 Genome accession   NZ_CP094085
Coordinates   1503411..1503674 (-) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori strain Hpfe095     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1498411..1508674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG64_RS07150 (MPG64_07150) - 1499385..1500725 (-) 1341 WP_041201979.1 hypothetical protein -
  MPG64_RS07160 (MPG64_07160) comB4 1501046..1503409 (-) 2364 WP_245076144.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG64_RS07165 (MPG64_07165) comB3 1503411..1503674 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPG64_RS07170 (MPG64_07170) comB2 1503674..1503955 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG64_RS07175 (MPG64_07175) - 1504100..1504927 (-) 828 WP_212893840.1 DUF5718 family protein -
  MPG64_RS07180 (MPG64_07180) - 1505019..1506071 (-) 1053 WP_245076146.1 MnmA/TRMU family protein -
  MPG64_RS07185 (MPG64_07185) dnaG 1506068..1507747 (-) 1680 WP_245076148.1 DNA primase -
  MPG64_RS07190 (MPG64_07190) groES 1508020..1508376 (+) 357 WP_101019328.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=666617 MPG64_RS07165 WP_000584953.1 1503411..1503674(-) (comB3) [Helicobacter pylori strain Hpfe095]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666617 MPG64_RS07165 WP_000584953.1 1503411..1503674(-) (comB3) [Helicobacter pylori strain Hpfe095]
ATGATTATCCTGTCAGCAAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCACCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGCTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989