Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG393_RS17615 Genome accession   NZ_CP108677
Coordinates   3991276..3992679 (-) Length   467 a.a.
NCBI ID   WP_327375612.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01216     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3986276..3997679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG393_RS17590 (OG393_17620) - 3986372..3986938 (-) 567 WP_327375607.1 SigE family RNA polymerase sigma factor -
  OG393_RS17595 (OG393_17625) - 3987170..3988114 (-) 945 WP_327375608.1 A/G-specific adenine glycosylase -
  OG393_RS17600 (OG393_17630) - 3988137..3988799 (-) 663 WP_327375609.1 phosphatase PAP2 family protein -
  OG393_RS17605 (OG393_17635) - 3988988..3989815 (+) 828 WP_327375610.1 hypothetical protein -
  OG393_RS17610 (OG393_17640) disA 3989925..3991049 (-) 1125 WP_327375611.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG393_RS17615 (OG393_17645) radA/sms 3991276..3992679 (-) 1404 WP_327375612.1 DNA repair protein RadA Machinery gene
  OG393_RS17620 (OG393_17650) - 3992853..3994568 (+) 1716 WP_327375613.1 hypothetical protein -
  OG393_RS17625 (OG393_17655) - 3994699..3995553 (-) 855 WP_327375614.1 hypothetical protein -
  OG393_RS17630 (OG393_17660) - 3995594..3996526 (+) 933 WP_327375615.1 Ppx/GppA phosphatase family protein -
  OG393_RS17635 (OG393_17665) - 3996709..3997545 (+) 837 WP_327375616.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 49025.08 Da        Isoelectric Point: 7.7221

>NTDB_id=664994 OG393_RS17615 WP_327375612.1 3991276..3992679(-) (radA/sms) [Streptomyces sp. NBC_01216]
MAARTRSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIAQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDVAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEIRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVTEVADVGEALRVLPRSRRTPAAKEAEG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=664994 OG393_RS17615 WP_327375612.1 3991276..3992679(-) (radA/sms) [Streptomyces sp. NBC_01216]
ATGGCTGCCCGTACGAGATCCGCCAAGGACAGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAATGGCT
CGGCCGTTGCCCCGAGTGCCAGGCATGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGCACGACAGCCGCCGGCC
GCGTGTCCACCGCCGCCCTCCCCATCGCCCAGGTCGACGGACGGCAGGCCACCGCGCGTTCCACGGGCGTCGACGAGCTG
GACCGTGTCCTCGGGGGCGGCCTGGTACCCGGCGCGGTCGTGCTGCTCGCCGGGGAGCCGGGGGTCGGCAAGTCCACCCT
GCTCCTGGACGTGGCCGCGAAGGCCGCGTCCGACGAACACCGCACCCTGTACGTCACCGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAACGCGCTGAGCGACCATCTGTACCTGGCGGCCGAGACCGACCTGTCGGCCGTGCTC
GGCCATCTCGACGCGGTCAAACCCTCGCTGCTGATCATGGACTCGGTACAGACGGTGGCCTCCCCCGAGATCGACGGGGC
CCCGGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGGGCCTCCAAGGAGCGGGGCATGTCCACGCTGC
TGGTGGGCCACGTCACCAAGGACGGCGCCATCGCCGGGCCCCGGCTCCTGGAGCACCTGGTCGACGTGGTGCTGAGCTTC
GAGGGCGACCGGCACGCCCGCCTGCGCCTGGTCCGCGGCGTGAAGAACCGCTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGGATCACGGGCCTGACCGACCCCTCGGGCCTGTTCCTGACCCGGCGGGACGTGGCCGTGCCCG
GCACCTGCCTGACCGTGACGCTGGAGGGCCGCCGGCCGCTCGTGGCCGAGGTGCAGGCTCTCACGGTCGACTCCCAGATC
CCCTCGCCCCGCCGCACGACCTCGGGCCTGGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGCGACATCTACAGCGCCACGGTGGGCGGCGTGAAGCTCTCCGAGCCGGCCGCCGACCTGG
CCGTCGCCCTCGCCCTGGCCTCCGCGGCCAGCGACGTCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTCGGGCTG
GCGGGCGAGATCCGCCGGGTCACCGGCGTCCAGCGCCGGCTCGCCGAGGCCCACCGCCTCGGATTCACCCACGCCCTGGT
CCCGGCCGACCCCGGAAAGGTCCCGGCGGGCATGAAGGTGACGGAGGTGGCGGACGTGGGGGAGGCGCTTCGGGTGCTGC
CGCGGAGCCGCCGGACCCCGGCCGCGAAGGAAGCCGAGGGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(82-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

97.002

0.426
  radA Streptococcus mitis SK321

43.516

97.43

0.424
  radA Streptococcus mitis NCTC 12261

43.516

97.43

0.424
  radA Streptococcus pneumoniae TIGR4

43.584

96.788

0.422
  radA Streptococcus pneumoniae R6

43.584

96.788

0.422
  radA Streptococcus pneumoniae Rx1

43.584

96.788

0.422
  radA Streptococcus pneumoniae D39

43.584

96.788

0.422