Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG393_RS07055 Genome accession   NZ_CP108677
Coordinates   1684203..1684994 (+) Length   263 a.a.
NCBI ID   WP_327373774.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01216     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679203..1689994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG393_RS07035 (OG393_07055) - 1679241..1679402 (+) 162 WP_327373770.1 hypothetical protein -
  OG393_RS07040 (OG393_07060) - 1679494..1680024 (+) 531 WP_327373771.1 TerD family protein -
  OG393_RS07045 (OG393_07065) - 1680132..1683020 (-) 2889 WP_327373772.1 vitamin B12-dependent ribonucleotide reductase -
  OG393_RS07050 (OG393_07070) nrdR 1683199..1683708 (-) 510 WP_327373773.1 transcriptional regulator NrdR -
  OG393_RS07055 (OG393_07075) dinR/lexA 1684203..1684994 (+) 792 WP_327373774.1 transcriptional repressor LexA Regulator
  OG393_RS07060 (OG393_07080) - 1685095..1687068 (-) 1974 WP_327373775.1 ATP-dependent DNA helicase -
  OG393_RS07065 (OG393_07085) - 1687118..1688950 (-) 1833 WP_327373776.1 IucA/IucC family siderophore biosynthesis protein -
  OG393_RS07070 (OG393_07090) - 1689011..1689745 (-) 735 WP_327373777.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28480.25 Da        Isoelectric Point: 6.9854

>NTDB_id=664965 OG393_RS07055 WP_327373774.1 1684203..1684994(+) (dinR/lexA) [Streptomyces sp. NBC_01216]
MTTTADSATITAQDRSQGRLEPVHAMNETVMNTDGEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSNQPADTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=664965 OG393_RS07055 WP_327373774.1 1684203..1684994(+) (dinR/lexA) [Streptomyces sp. NBC_01216]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
CGAGACAGTCATGAACACGGACGGGGAGCCCGGCCGACCCGCGCGCTCACTGCCCGGCCGACCTCCGGGCATCAGGGCGG
ACAGCTCCGGTCTCACCGACCGGCAACGCCGGGTCATCGAGGTCATCCGGGACTCGGTCCAGCGGCGCGGCTACCCGCCG
TCGATGCGTGAGATCGGCCAGGCGGTGGGCCTCTCCAGCACCTCCTCGGTCGCCCACCAGCTGATGGCCCTGGAGCGCAA
GGGGTTCCTGCGTCGCGACCCGCATCGCCCCCGGGCGTACGAGGTCCGGGGCTCGGACCAGCCCAGCAACCAGCCGGCGG
ACACCACGGGCAAGCCCGCGGCCTCCTACGTACCCCTGGTGGGCCGGATCGCCGCAGGCGGCCCGATCCTCGCGGAGGAG
TCCGTCGAGGACGTCTTCCCGCTGCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTGCTGAAGGTGGTCGGCGACTC
GATGATCGAGGCCGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGTCAGCCCGTGGCGGAGAACGGGGACATCGTGG
CGGCCATGCTCGACGGCGAAGCCACGGTGAAGCGTTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCCCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTGGCGGTCCTCCGACGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.608

0.373