Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   APT55_RS11950 Genome accession   NZ_AP014642
Coordinates   2552411..2553967 (-) Length   518 a.a.
NCBI ID   WP_144056228.1    Uniprot ID   -
Organism   Leptolyngbya boryana dg5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2547411..2558967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT55_RS11920 (LBDG_23780) - 2549033..2549794 (+) 762 WP_017288969.1 PEP-CTERM sorting domain-containing protein -
  APT55_RS11925 (LBDG_23790) rdgB 2549865..2550440 (-) 576 WP_017288968.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  APT55_RS11930 (LBDG_23800) - 2550437..2551129 (-) 693 WP_017288967.1 GDSL-type esterase/lipase family protein -
  APT55_RS11935 (LBDG_23810) - 2551274..2551519 (+) 246 WP_017288966.1 DNA-directed RNA polymerase subunit omega -
  APT55_RS11940 (LBDG_23820) - 2551566..2552003 (+) 438 WP_017288965.1 hypothetical protein -
  APT55_RS11945 (LBDG_23830) - 2552000..2552359 (+) 360 WP_017288964.1 DUF1818 family protein -
  APT55_RS11950 (LBDG_23840) comA 2552411..2553967 (-) 1557 WP_144056228.1 phospholipase D-like domain-containing protein Machinery gene
  APT55_RS11955 (LBDG_23850) - 2554061..2555230 (+) 1170 WP_017288962.1 cysteine desulfurase family protein -
  APT55_RS11960 (LBDG_23860) - 2555227..2555760 (-) 534 WP_017288961.1 hypothetical protein -
  APT55_RS11965 (LBDG_23870) psbC 2555892..2557274 (-) 1383 WP_017288960.1 photosystem II reaction center protein CP43 -
  APT55_RS11970 (LBDG_23880) psbD 2557258..2558313 (-) 1056 WP_017287122.1 photosystem II D2 protein (photosystem q(a) protein) -

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 57530.37 Da        Isoelectric Point: 7.2386

>NTDB_id=66492 APT55_RS11950 WP_144056228.1 2552411..2553967(-) (comA) [Leptolyngbya boryana dg5]
MVRLNHLIQFSLCTLLFAGCRAASSSISVRPLPQDPNIQVFTNQAAASEYTEPYRKITRAGDNLEEVLIDTIAQAKSSID
VAVQEFRLPNVAKALRDRAAAGVTVRVILENQYARPYSSYSAAEVEKLPEREKARYQESRTLIDQDQDGQLSLTEIQDRD
ALVMLDVAKIPRIDDRADGSRGSNLMHHKFIVVDGKTTIVTSANFTMSDVHGDFARPSSRGNANNLLKMESVEVAQAFTA
EFELMWSDRKFGVKKPFRPAQQFKLGESVISLQFSPNSRTIPWEQTPNGLIAKTLQQSTQAIDLALFVFSDQDLVNTIEG
KSIRALIEPSFMYRPFSEGLDMLGVALSNNCKWEVNNRPWQNPIKTAGVPQLPPGDMLHHKFGIVDGHTVITGSHNWTLA
ANRGNDETVIVIRNPVVAAHFQREFDRLYANSVLGIPPAIQRKVEAEQKQCPPPSQSRTGLVNLNTATQAELEALPGVGS
GLAKRIIQARPFQSLEDLDHVPGVGKKLIERLSDRVTW

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=66492 APT55_RS11950 WP_144056228.1 2552411..2553967(-) (comA) [Leptolyngbya boryana dg5]
GTGGTCAGACTGAATCACCTTATCCAGTTTAGTCTCTGTACGCTCCTATTTGCGGGATGCCGAGCAGCTTCATCTTCGAT
CAGTGTGCGCCCACTGCCACAAGATCCCAACATCCAAGTCTTTACGAATCAAGCAGCGGCCTCTGAATATACTGAGCCGT
ATCGCAAAATTACAAGGGCAGGCGATAACTTAGAAGAAGTTTTAATCGATACGATCGCACAGGCAAAGTCGAGCATTGAT
GTTGCTGTTCAAGAATTTCGATTGCCTAATGTGGCGAAGGCATTGCGCGATCGAGCCGCAGCAGGCGTGACCGTGCGAGT
GATTCTCGAAAATCAGTACGCTCGTCCTTACAGCAGTTATTCTGCCGCAGAAGTTGAGAAATTGCCGGAGCGAGAAAAAG
CGAGATATCAGGAATCCAGAACGCTGATCGATCAAGATCAAGATGGACAGTTAAGCCTGACTGAAATTCAGGATCGAGAT
GCCTTAGTGATGTTGGATGTTGCGAAGATTCCTCGGATCGATGATCGAGCCGATGGCAGCCGAGGCAGTAACTTAATGCA
CCACAAATTCATAGTTGTGGATGGAAAGACTACGATCGTGACTTCGGCAAACTTCACGATGTCAGACGTACACGGAGACT
TTGCTCGTCCTAGCAGCCGCGGCAATGCTAATAATTTGCTGAAGATGGAAAGTGTGGAAGTTGCACAGGCTTTTACAGCA
GAATTTGAACTCATGTGGAGCGATCGCAAATTTGGCGTGAAAAAGCCATTTCGTCCAGCACAGCAGTTCAAACTGGGCGA
GAGCGTGATTTCCTTGCAGTTCTCACCCAATTCCAGAACGATTCCCTGGGAACAAACACCCAATGGTTTGATTGCCAAAA
CGCTTCAGCAATCCACGCAAGCGATCGATTTAGCGTTGTTTGTGTTCTCGGATCAGGATCTAGTTAATACGATCGAAGGA
AAATCAATTCGGGCATTAATCGAACCCAGCTTCATGTATAGACCTTTCAGCGAAGGTTTAGATATGTTAGGCGTGGCGCT
AAGTAATAACTGCAAGTGGGAAGTCAATAATCGTCCTTGGCAAAATCCCATCAAGACAGCTGGAGTGCCGCAACTTCCGC
CCGGTGATATGTTGCATCACAAGTTTGGAATTGTAGACGGACATACCGTGATTACAGGGTCTCATAACTGGACGCTTGCC
GCGAATCGTGGAAATGATGAAACGGTTATCGTGATTCGGAATCCGGTAGTTGCAGCCCATTTTCAACGAGAATTTGATCG
ACTGTATGCAAATTCAGTTCTGGGGATTCCTCCAGCAATTCAGCGCAAGGTTGAGGCTGAACAGAAACAATGTCCTCCAC
CAAGCCAATCTCGCACCGGGTTAGTCAATCTCAATACTGCAACTCAGGCAGAGTTAGAAGCATTGCCGGGAGTTGGCTCA
GGATTAGCGAAACGAATCATTCAAGCCCGTCCATTTCAGTCCTTGGAAGATCTCGATCATGTGCCTGGTGTCGGGAAGAA
GTTGATAGAACGCTTGAGCGATCGTGTGACCTGGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(461-517)

PLD-like domain (PLDc_2)

(68-246)

PLD-like domain (PLDc_2)

(292-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.733

99.035

0.483

Multiple sequence alignment