Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG444_RS21910 Genome accession   NZ_CP108518
Coordinates   4742136..4743548 (-) Length   470 a.a.
NCBI ID   WP_327263785.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4737136..4748548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG444_RS21885 (OG444_21870) - 4737468..4738028 (-) 561 WP_030010715.1 SigE family RNA polymerase sigma factor -
  OG444_RS21890 (OG444_21875) - 4738214..4739155 (-) 942 WP_327263781.1 A/G-specific adenine glycosylase -
  OG444_RS21895 (OG444_21880) - 4739179..4739802 (-) 624 WP_327263782.1 phosphatase PAP2 family protein -
  OG444_RS21900 (OG444_21885) - 4740025..4740759 (+) 735 WP_327263783.1 hypothetical protein -
  OG444_RS21905 (OG444_21890) disA 4740829..4741953 (-) 1125 WP_327263784.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG444_RS21910 (OG444_21895) radA/sms 4742136..4743548 (-) 1413 WP_327263785.1 DNA repair protein RadA Machinery gene
  OG444_RS21915 (OG444_21900) - 4743836..4745599 (+) 1764 WP_327263786.1 hypothetical protein -
  OG444_RS21920 (OG444_21905) - 4745649..4746509 (-) 861 WP_327263787.1 hypothetical protein -
  OG444_RS21925 (OG444_21910) - 4746528..4747778 (-) 1251 WP_327263788.1 zinc ribbon domain-containing protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49262.45 Da        Isoelectric Point: 8.0046

>NTDB_id=662162 OG444_RS21910 WP_327263785.1 4742136..4743548(-) (radA/sms) [Streptomyces sp. NBC_01232]
MAARTARSSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAALPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRSRTPARERSAE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=662162 OG444_RS21910 WP_327263785.1 4742136..4743548(-) (radA/sms) [Streptomyces sp. NBC_01232]
ATGGCTGCCCGCACTGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGCGAA
GTGGCTCGGACGCTGTCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGATGGGCGCGCCCGCCGTGCGGACCACCGCCG
CCGGCCGGGTCTCGACCGCCGCCCTGCCGATCGCGCAGGTCGACGGCCGGACCGCGACCGCCCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTGGTGCTGCTCGCCGGTGAGCCCGGCGTCGGCAAGTC
GACGCTGCTGCTCGACGTCGCGGCGAAGGCGGCCAGCGACGAGCACCGCACGCTGTACGTGACGGGCGAGGAGTCCGCGA
GCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCCCTCAGTGATCACCTCTATCTGGCTGCCGAGACCGATCTGTCCGCC
GTGCTCGGGCACCTCGACGCGGTGAAGCCCTCCCTGCTGGTCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAACGCGGGATGGCCA
CCCTCCTCGTGGGCCACGTGACCAAGGACGGCGCCATCGCCGGCCCGCGTCTGCTGGAGCACCTCGTCGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCATCAAGAACCGTTACGGCGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGCCGCGCCGAGGCGG
TGCCCGGCACCTGCCTGACCGTGACTCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCCCCCCGGCGCACGACCTCGGGCCTGGAGACCTCCCGCGTGTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCCACGGTGGGCGGGGTGAAGCTCACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCCTCGGCCGCCAGCGACGTCCCGCTGCCGAAGAACCTCGTGGCGATCGGGGAGGTC
GGCCTGGCCGGCGAGGTGCGGCGGGTGACGGGCGTGCAGCGGCGTCTCGCGGAGGCGCACCGGCTGGGGTTCACCCACGC
GCTGGTGCCGGCGGATCCGGGCAAGGTGCCGGCCGGGATGAAGGTCATCGAAGTGGCCGACATGGGCGACGCACTACGGG
TGTTGCCGCGCGGGCGGTCCCGCACGCCGGCCAGGGAGCGGTCCGCGGAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

96.383

0.428
  radA Streptococcus mitis SK321

42.857

96.809

0.415
  radA Streptococcus mitis NCTC 12261

42.857

96.809

0.415
  radA Streptococcus pneumoniae TIGR4

42.92

96.17

0.413
  radA Streptococcus pneumoniae R6

42.92

96.17

0.413
  radA Streptococcus pneumoniae Rx1

42.92

96.17

0.413
  radA Streptococcus pneumoniae D39

42.92

96.17

0.413