Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG458_RS19785 Genome accession   NZ_CP108435
Coordinates   4513782..4515191 (+) Length   469 a.a.
NCBI ID   WP_164372956.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01281     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4508782..4520191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG458_RS19770 (OG458_19740) - 4509672..4510604 (-) 933 WP_164372959.1 Ppx/GppA phosphatase family protein -
  OG458_RS19775 (OG458_19745) - 4510814..4511569 (+) 756 WP_239155511.1 hypothetical protein -
  OG458_RS19780 (OG458_19750) - 4511622..4513469 (-) 1848 WP_327409249.1 hypothetical protein -
  OG458_RS19785 (OG458_19755) radA/sms 4513782..4515191 (+) 1410 WP_164372956.1 DNA repair protein RadA Machinery gene
  OG458_RS19790 (OG458_19760) disA 4515260..4516384 (+) 1125 WP_081218647.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG458_RS19795 (OG458_19765) - 4516488..4517321 (-) 834 WP_327409250.1 hypothetical protein -
  OG458_RS19800 (OG458_19770) - 4517513..4518430 (+) 918 WP_327409251.1 A/G-specific adenine glycosylase -
  OG458_RS19805 (OG458_19775) - 4518692..4519243 (+) 552 WP_164372953.1 SigE family RNA polymerase sigma factor -
  OG458_RS19810 (OG458_19780) - 4519285..4519881 (+) 597 WP_164372952.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49744.87 Da        Isoelectric Point: 8.2564

>NTDB_id=660505 OG458_RS19785 WP_164372956.1 4513782..4515191(+) (radA/sms) [Streptomyces sp. NBC_01281]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEAVPGTCLTVTLEGRRPLVVEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALGLASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGRVPAGMKVQEVADIGEALSVLPRSRRREAPREEERRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=660505 OG458_RS19785 WP_164372956.1 4513782..4515191(+) (radA/sms) [Streptomyces sp. NBC_01281]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCACGCCCGCCGTCCGGACGACGGCACCGGGCC
GGGTGACCACCTCCGCGGTCCCGATCGGACAGGTCGACGGCCGTCAGGCCACCGCCCGCAGCACCGGCGTGCCCGAGCTG
GACCGTGTCCTCGGCGGCGGACTCGTGCCCGGCGCGGTCGTCCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
CCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACCCTGTATGTGACGGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTCTATCTCGCCGCCGAGACCGATCTGGCCGCCGTGCTC
GGCCACTTGGACGCCGTGAAGCCGTCCCTGCTGATCCTGGACTCCGTGCAGACCATCGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCGTCCAAGGAGCGGGGCATGTCCACCCTGC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTCGTGCGCGGCGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTGACCGACCCCTCGGGGCTCTTCCTCACGCGCCGCGCCGAGGCCGTGCCCG
GCACCTGTCTGACCGTCACCCTGGAAGGCCGCCGTCCCCTGGTCGTCGAGGTGCAGGCGCTCACCGTGGACTCGCAGATC
CCCTCCCCGCGGCGCACGACGTCCGGCCTGGAGACCTCCCGAGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGGAAGCGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CCATCGCGCTGGGCCTGGCGTCCGCGGCGAGCGACACCCCGCTGCCCAAGAACCTGGTGGCGATCGGTGAGGTGGGACTC
GCGGGCGAGGTGAGACGCGTCACGGGCGTGCAGCGCAGGCTGGCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTCGT
CCCGGCCGACCCCGGCAGGGTCCCGGCGGGTATGAAGGTCCAGGAAGTGGCGGACATCGGAGAGGCGCTGAGCGTCCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGAAGAGGAGCGGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus mitis SK321

44.131

90.832

0.401
  radA Streptococcus mitis NCTC 12261

44.131

90.832

0.401