Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MK848_RS06440 Genome accession   NZ_CP092824
Coordinates   1248246..1248992 (-) Length   248 a.a.
NCBI ID   WP_101172351.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1243246..1253992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS06415 (MK848_06425) mreC 1243652..1244524 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  MK848_RS06420 (MK848_06430) mreB 1244555..1245568 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  MK848_RS06425 (MK848_06435) radC 1245660..1246355 (-) 696 WP_003246034.1 DNA repair protein RadC -
  MK848_RS06430 (MK848_06440) maf 1246392..1246961 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  MK848_RS06435 (MK848_06445) spoIIB 1247114..1248112 (-) 999 WP_029318188.1 stage II sporulation protein SpoIIB -
  MK848_RS06440 (MK848_06450) comC 1248246..1248992 (-) 747 WP_101172351.1 A24 family peptidase Machinery gene
  MK848_RS06445 (MK848_06455) folC 1249135..1250427 (-) 1293 WP_029727116.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MK848_RS06450 (MK848_06460) valS 1250488..1253130 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  MK848_RS06455 (MK848_06465) - 1253576..1253767 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=660424 MK848_RS06440 WP_101172351.1 1248246..1248992(-) (comC) [Bacillus subtilis strain S1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=660424 MK848_RS06440 WP_101172351.1 1248246..1248992(-) (comC) [Bacillus subtilis strain S1]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992