Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG599_RS19250 Genome accession   NZ_CP108370
Coordinates   4477153..4478565 (-) Length   470 a.a.
NCBI ID   WP_327177208.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4472153..4483565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG599_RS19225 (OG599_19245) - 4472158..4472517 (-) 360 WP_327177202.1 trypco2 family protein -
  OG599_RS19230 (OG599_19250) - 4472992..4473699 (+) 708 WP_327177203.1 M23 family metallopeptidase -
  OG599_RS19235 (OG599_19255) - 4473849..4474754 (-) 906 WP_327177204.1 A/G-specific adenine glycosylase -
  OG599_RS19240 (OG599_19260) - 4475019..4475849 (+) 831 WP_327177205.1 hypothetical protein -
  OG599_RS19245 (OG599_19265) disA 4475948..4477072 (-) 1125 WP_327177206.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG599_RS19250 (OG599_19270) radA/sms 4477153..4478565 (-) 1413 WP_327177208.1 DNA repair protein RadA Machinery gene
  OG599_RS19255 (OG599_19275) - 4478650..4479486 (+) 837 WP_327177209.1 class I SAM-dependent methyltransferase -
  OG599_RS19260 (OG599_19280) - 4479766..4481868 (+) 2103 WP_327177210.1 hypothetical protein -
  OG599_RS19265 (OG599_19285) - 4482005..4482865 (-) 861 WP_327177211.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49497.65 Da        Isoelectric Point: 8.2584

>NTDB_id=659698 OG599_RS19250 WP_327177208.1 4477153..4478565(-) (radA/sms) [Streptomyces sp. NBC_01335]
MVARTKSTKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVASKAAGEEHRTLYVTAEESASQVRMRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKDRGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRRSRSEAPREDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=659698 OG599_RS19250 WP_327177208.1 4477153..4478565(-) (radA/sms) [Streptomyces sp. NBC_01335]
ATGGTTGCCCGTACGAAGTCCACGAAGGACCGTCCGTCCTACCGCTGCACGGAGTGCGGGTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGCACCGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGCACCACCGCGGCCG
GCCGGGTCTCCACCGCCGCGCTGCCCATCGGCCAGGTGGACAGCCGGCAGGCGACGGCCCGCTCGACCGGTGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTCGTCCCGGGCGCCGTGGTGCTGCTGGCCGGGGAGCCGGGGGTCGGCAAGTCGAC
CCTGCTGCTCGACGTGGCCTCGAAGGCCGCCGGCGAGGAGCACCGCACCCTCTACGTCACGGCCGAGGAGTCCGCGAGCC
AGGTCCGGATGCGCGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGACCTCTCGGCCGTG
CTCGGCCACCTCGACGCGGTGAAGCCCTCCCTACTGGTGCTGGACTCGGTGCAGACCGTCGCGTCGCCGGAGATCGAGGG
CGCGCCGGGCGGTATGGCGCAGGTCCGCGAGGTCGCCGGGGCGCTCATCCGCGCGTCCAAGGACCGGGGCATGGCGACCC
TGCTGGTGGGCCACGTCACGAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCG
TTCGAGGGGGACCGGCACGCGCGGCTGCGGCTGGTCCGGGGCGTCAAGAACCGTTACGGCGCGACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGGATCACGGGTCTCGCCGATCCGTCCGGCCTCTTCCTGACGCGGCGCGACGAGCCGGTGC
CCGGCACCTGTCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTCACGGTCGACTCGCAG
ATCCCGTCGCCCCGCCGCACCACCTCGGGTCTGGAGACCTCGCGGGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTCACCGAGCCCGCCGCGGACC
TGGCGATCGCGCTGGCGCTGGCGAGCGCGGCGAGCGACACCCCTCTCCCGAAGAACCTGGTCGCCATCGGTGAGGTGGGT
CTCGCCGGAGAGGTGCGCAGGGTCACCGGCGTGCAGCGCCGGCTGGCCGAGGCGCACCGCCTCGGGTTCACGCACGCGCT
GGTCCCGAGCGATCCGGGCAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCGACATGGGTGATGCTCTCAGGGTGC
TGCCGCGCCGGTCTCGTTCGGAGGCACCACGGGAGGACGGCGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.17

0.419
  radA Streptococcus pneumoniae Rx1

42.035

96.17

0.404
  radA Streptococcus pneumoniae D39

42.035

96.17

0.404
  radA Streptococcus pneumoniae R6

42.035

96.17

0.404
  radA Streptococcus pneumoniae TIGR4

42.035

96.17

0.404
  radA Streptococcus mitis SK321

43.458

91.064

0.396
  radA Streptococcus mitis NCTC 12261

43.458

91.064

0.396