Detailed information NTG0657082

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: MID13_RS06755
• Genome accession: NZ_CP092384
• Coordinates: 1484137..1485561 (-)
• Length: 474 a.a.
• NCBI ID: WP_086713214.1
• Uniprot ID: -
• Organism: Vibrio gigantis strain ACE001
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1479137..1490561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MID13_RS06730 (MID13_06730)	-	1479720..1480373 (+)	654	WP_086713209.1	thiopurine S-methyltransferase	-
MID13_RS06735 (MID13_06735)	purT	1480488..1481663 (-)	1176	WP_215406281.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
MID13_RS06740 (MID13_06740)	cdd	1481830..1482717 (-)	888	WP_239717915.1	cytidine deaminase	-
MID13_RS06745 (MID13_06745)	-	1483060..1483737 (-)	678	WP_215406277.1	LrgB family protein	-
MID13_RS06750 (MID13_06750)	-	1483740..1484111 (-)	372	WP_086713213.1	CidA/LrgA family protein	-
MID13_RS06755 (MID13_06755)	sbcB	1484137..1485561 (-)	1425	WP_086713214.1	exodeoxyribonuclease I	Machinery gene
MID13_RS06760 (MID13_06760)	-	1486504..1486938 (+)	435	WP_239717916.1	DUF4402 domain-containing protein	-
MID13_RS06765 (MID13_06765)	-	1486993..1487430 (+)	438	WP_190960456.1	DUF4402 domain-containing protein	-
MID13_RS06770 (MID13_06770)	-	1487427..1488137 (+)	711	WP_086713216.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54608.82 Da
• Isoelectric Point: 4.8620

>NTDB_id=657082 MID13_RS06755 WP_086713214.1 1484137..1485561(-) (sbcB) [Vibrio gigantis strain ACE001]
MSSDNQSTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELNTDELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=657082 MID13_RS06755 WP_086713214.1 1484137..1485561(-) (sbcB) [Vibrio gigantis strain ACE001]
ATGAGTTCAGATAATCAGTCGACCTACTTCTTTTTCGATTACGAAACTTGGGGCGTTAGTCCAGCGAAAGATCGTCCAAG
TCAATTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAACCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTTCCTGCTCCTGAAGCAGCATTGATCACCCGTATCACACCTCAAAAAGCGGCTTCACAAGGCCTTCCTGAACCA
GAGTTTATCGCTAAGATCCACGCTGAGTTAGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
CGAAGTAACGCGATACACCTGTTACCGTAACTTCATCGATCCATACGCATGGAGCTGGCAGAACGGTAATTCGCGTTGGG
ATCTGTTAGATGTCATGCGCGCCGTACACGCACTTCGCCCAGACGGTATTGTGTGGCCAGAAAATGAAGAAGGTTATCCA
AGCTTCAAACTGGAACATCTCTCTGTGGCAAACGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAGCCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTAGTTGATATCGTAAACATGACACCTTTGATGCACGTTTCGGGTATGTTTGGTCGAGATTGCAATTAC
ACAAGCTGGATTGTTCCTATGGCGTGGCACCCGACCAATCAAAACGCCGTTATCGTAGTGGACTTAGCGAAAGACCCTAG
CCCACTGCTTGAGCTAAATACCGACGAGCTAAGAGACAGACTCTACACCAAGCGCAGTGAACTAGGTGAAGATGAGCTAC
CGGTACCAATCAAACTGGTACAACTCAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAACGCCGAA
ACCATCGGTATCGATCGCCAGCAATGCTTGAAGAACTTAGCTCTATTACGTGAACATCCAGAGATCCGTGAAAAACTGAT
CGGTCTGTACTCACAAGAGCGAGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCGAACAACTTGGCAGCTTTGGATATCACCTTTGGTGACGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCACGTAACTTCCCATGGACTCTCGACGAAGCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAATTTTATGAGAGCCGTTTAGAAGAGTACATGCTTAACCTCGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.687	99.789	0.755