Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU33_RS02665 Genome accession   NZ_CP108237
Coordinates   554347..555018 (-) Length   223 a.a.
NCBI ID   WP_266524591.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00079     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 549347..560018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU33_RS02635 (OHU33_02630) - 549388..549693 (+) 306 WP_405656681.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  OHU33_RS02640 (OHU33_02635) - 549670..550944 (-) 1275 WP_327667778.1 MFS transporter -
  OHU33_RS02645 (OHU33_02640) - 551131..551841 (+) 711 WP_328432637.1 transposase -
  OHU33_RS02650 (OHU33_02645) - 551983..552747 (-) 765 WP_405656684.1 hypothetical protein -
  OHU33_RS02655 (OHU33_02650) - 553295..553498 (-) 204 WP_405626414.1 hypothetical protein -
  OHU33_RS02665 (OHU33_02660) dinR/lexA 554347..555018 (-) 672 WP_266524591.1 transcriptional repressor LexA Regulator
  OHU33_RS02670 (OHU33_02665) - 555249..555467 (-) 219 WP_266524589.1 hypothetical protein -
  OHU33_RS02675 (OHU33_02670) - 555762..556115 (-) 354 WP_266593786.1 VOC family protein -
  OHU33_RS02680 (OHU33_02675) - 556453..556911 (+) 459 WP_266524585.1 SRPBCC family protein -
  OHU33_RS02685 (OHU33_02680) - 557007..557819 (-) 813 WP_266524582.1 family 1 encapsulin nanocompartment shell protein -
  OHU33_RS02690 (OHU33_02685) - 557816..558877 (-) 1062 WP_266593780.1 Dyp-type peroxidase -
  OHU33_RS02695 (OHU33_02690) - 559197..559934 (+) 738 WP_405656688.1 low temperature requirement protein A -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24278.62 Da        Isoelectric Point: 4.9902

>NTDB_id=656898 OHU33_RS02665 WP_266524591.1 554347..555018(-) (dinR/lexA) [Streptomyces sp. NBC_00079]
MENTTPARRGRPQGPGTAEGELTGRQAAIVRYITETVDRQGYPPSMREIGKAVDLNSTSSVAYQLLALERKGILYRDPHR
PRAYRVRPSWAPDLDGKAVEQVDVPLVGRIAAGAPLLADEMVEDVYTLPRQVVGDGEVFALTVSGDSMVDAAICDGDIVA
VKRQDSADHGDIVAALLEDEATVKVLRRQDGQVWLMPRNPAYEPIRGDEARILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=656898 OHU33_RS02665 WP_266524591.1 554347..555018(-) (dinR/lexA) [Streptomyces sp. NBC_00079]
ATGGAGAACACCACGCCCGCCCGCCGGGGCCGACCTCAAGGCCCCGGCACTGCCGAAGGAGAGCTGACGGGCCGCCAGGC
GGCCATCGTCCGCTACATCACGGAGACGGTCGACCGACAGGGATACCCGCCGTCGATGCGGGAGATCGGCAAGGCCGTAG
ACCTCAACAGCACCTCCTCGGTCGCCTACCAACTGCTCGCGCTCGAGCGCAAAGGCATCCTCTATCGCGACCCGCACCGG
CCTCGCGCCTACCGGGTCAGGCCGTCATGGGCGCCTGACCTCGATGGCAAAGCCGTGGAACAGGTCGATGTGCCGCTCGT
CGGCCGGATCGCCGCCGGCGCGCCCCTGCTCGCCGACGAGATGGTCGAGGACGTCTACACCCTGCCCCGTCAGGTCGTGG
GCGACGGCGAGGTGTTCGCGCTGACGGTGTCCGGCGACAGCATGGTCGACGCGGCGATCTGCGACGGAGACATCGTCGCC
GTCAAACGACAGGACAGCGCCGATCACGGCGACATCGTCGCCGCGCTCCTTGAGGACGAGGCCACTGTCAAAGTACTGCG
CCGGCAGGACGGGCAGGTGTGGCTCATGCCCCGCAATCCGGCCTACGAGCCGATCCGCGGCGACGAGGCGCGGATCCTCG
GCAAGGTCGTCGGCGTTCTCCGCGTTCTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.366

91.928

0.417