Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LBPC_RS01225 Genome accession   NZ_AP012541
Coordinates   242710..244509 (-) Length   599 a.a.
NCBI ID   WP_004562162.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 237710..249509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBPC_RS01200 (LBPC_0233) - 238985..239329 (+) 345 WP_003563007.1 hypothetical protein -
  LBPC_RS01205 (LBPC_0234) - 239403..240122 (+) 720 WP_003563009.1 metal ABC transporter ATP-binding protein -
  LBPC_RS01210 (LBPC_0235) - 240119..240916 (+) 798 WP_003563011.1 metal ABC transporter permease -
  LBPC_RS01215 (LBPC_0236) - 240984..241835 (-) 852 WP_004562158.1 metallophosphoesterase family protein -
  LBPC_RS01220 (LBPC_0237) - 241832..242713 (-) 882 WP_004562160.1 NAD(P)-dependent oxidoreductase -
  LBPC_RS01225 (LBPC_0238) pepF 242710..244509 (-) 1800 WP_004562162.1 oligoendopeptidase F Regulator
  LBPC_RS01230 (LBPC_0239) - 244638..245732 (+) 1095 WP_041091344.1 LCP family protein -
  LBPC_RS01235 (LBPC_0240) brnQ 245884..247263 (-) 1380 WP_003573173.1 branched-chain amino acid transport system II carrier protein -
  LBPC_RS01240 (LBPC_0241) - 248103..248789 (-) 687 WP_004562168.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67279.47 Da        Isoelectric Point: 5.8465

>NTDB_id=65292 LBPC_RS01225 WP_004562162.1 242710..244509(-) (pepF) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNAAYQAMNAKAESLAADLASQLAFMDPEILAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTVAESLIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKA
HNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQA
KDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQAQFADFEHWIHQQDQHGEPLTA
TSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKY
AIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=65292 LBPC_RS01225 WP_004562162.1 242710..244509(-) (pepF) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
ATGCAACATTTACCGGCACGCGCAGAAGTCCCTACTGAATTGACATGGGATCTCACGACCATTTATCCAGATGACAAGGC
TTGGCAAGTTGACTTTGAAGCCGTTCGTCAGCAAGCAAAGGAAGCGGCAGCACTTAAGGGTACATTGGGCAAGTCGCCTG
AAGCACTTGTCGCAGGTATCAAAGCCGTTCTCGCGGTGTTCAGACGCTTTGAAAAGGTTTATGTCTATTCCAGCTTGAAA
AGTGATCAGGACACTGGTAATGCAGCGTATCAAGCCATGAATGCCAAAGCAGAAAGTCTGGCGGCTGATCTTGCCAGCCA
ATTAGCCTTCATGGATCCGGAAATTCTGGCGATTCCAGCCGATCAGTTGACCGCTTGGCGCGATACCGAAAGCCTCAAAC
CCTATGGTCACTTTATTGATGCCATCACTGTGAATCGCCAACACGTCCTGACCACAGTGGCTGAGTCATTAATTGCCAGT
GCTGGGGATGCGCTGAATGCCAGTCATGCAACCTTTAATGTGTTGAACAACTCCGACCTGCAATTTGGCTTTGTTGAAAA
TGAAGACGGTGAGACCGTGCAACTCAGCAATGGTTTGTATGGTCAACTCATTCGGTCAACAAATCGCAAGCTGCGTAAAG
ACGCGTTTGAGGCTTTGCTGCGGGCATATGAAAGTCTTAAGAATACCTTTGCTCAAACATTAAGTGGCCAGATCAAAGCT
CATAACTTCAATGCTTTAGCGCATCATTATCCCGATGCACGCGCTGCTGCAATGGCAAGTAACCACATCCCCGAAAGTGT
CTACACAACACTGCTTGATCAAGTCAATGCTCACTTGCCATTACTACATCGCTATATTGCCTTACGTAAAAAGATCCTGA
ATGTCGATCAACTGCATATGTATGATATCTACACACCGCTGACCGGACGTCCGCCATTGAGTTTCACCCTCGATCAGGCA
AAAGACGAAGCCTTAAAGGCATTGGCTCCGCTGGGAAATGATTATTTAGATCATATGCGGGAAATCTTTAATAATCGTTA
CATTGATGTCGTCGAAAATAAGGGCAAACGGTCCGGCGCTTATTCCGGTGGCGCGTATGACACCAATCCGTTCATTTTAC
TGAACTGGCACGATGCCGTTGATGAATTGTACACTTTGGTTCACGAAACTGGTCACAGTGTGCACAGCTGGTACACTCGT
CATCACCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTCGCAGAAATTGCCTCAACAACCAATGAAAATTTATTGAC
GGACTACTTCCTAAAAAACACCAATGATCCTAAAGTTCGGGCGTACATTTTGAATTACTATCTAGACGGCTTCAAAGGAA
CGGTCTTCCGTCAGGCTCAATTTGCCGACTTTGAACATTGGATTCATCAACAAGACCAGCATGGTGAACCATTGACGGCT
ACCAGCATGTCCTCCTATTATGCGGATCTCAATGCCCGTTATTACGGACCAGATGTTGCACGTGATCCTGAAATCGCCTT
TGAATGGGCTCGTATTCCACATTTCTATTACAATTATTATGTTTACCAGTACGCAACTGGTTTTGCCGCTGCCTCGACTC
TGGCCGCCGGCATCAGCGGTGGCGAACCAGAGGCGGTTTCCCGCTATATCGGCTACTTGAAATCTGGCAGTTCCAAGTAT
GCGATTGATACAATGAAAGCGGCCGGCGTTGATATGACCAAGCCAGATTATTTAGAAGCCGCCTTCTCACTATTTGAACA
ACGACTCGCTGAATTAGAAAAAATTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.165

0.513

Multiple sequence alignment