Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG860_RS18395 Genome accession   NZ_CP108076
Coordinates   4089841..4091250 (+) Length   469 a.a.
NCBI ID   WP_328480457.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4084841..4096250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS18380 (OG860_18365) - 4085777..4086709 (-) 933 WP_328480455.1 Ppx/GppA phosphatase family protein -
  OG860_RS18385 (OG860_18370) - 4086981..4087760 (+) 780 WP_328484555.1 hypothetical protein -
  OG860_RS18390 (OG860_18375) - 4087813..4089564 (-) 1752 WP_328480456.1 hypothetical protein -
  OG860_RS18395 (OG860_18380) radA/sms 4089841..4091250 (+) 1410 WP_328480457.1 DNA repair protein RadA Machinery gene
  OG860_RS18400 (OG860_18385) disA 4091331..4092455 (+) 1125 WP_328480458.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG860_RS18405 (OG860_18390) - 4092626..4093492 (-) 867 WP_328480459.1 hypothetical protein -
  OG860_RS18410 (OG860_18395) - 4093754..4094686 (+) 933 WP_328480460.1 A/G-specific adenine glycosylase -
  OG860_RS18415 (OG860_18400) - 4094987..4095529 (+) 543 WP_190149519.1 SigE family RNA polymerase sigma factor -
  OG860_RS18420 (OG860_18405) - 4095514..4096173 (+) 660 WP_328480461.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49670.74 Da        Isoelectric Point: 7.7225

>NTDB_id=652828 OG860_RS18395 WP_328480457.1 4089841..4091250(+) (radA/sms) [Streptomyces sp. NBC_00267]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARPTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGRVPAGMKVLEVADIGDALRVLPRSRRREAPREAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=652828 OG860_RS18395 WP_328480457.1 4089841..4091250(+) (radA/sms) [Streptomyces sp. NBC_00267]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACGGAATGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCATGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACGCCGGGGC
GCGTCACCACCTCGGCCCTGCCCATCGGCCAGGTCGACGGGCGGCAGGCCACCGCCCGCCCCACCGGTGTGGCCGAGCTG
GACCGGGTCCTCGGCGGGGGACTCGTACCCGGGGCGGTCGTGCTCCTGGCGGGCGAGCCGGGCGTGGGCAAGTCGACCCT
GCTCCTGGACGTGGCGGCCAAGTCGGCGAGTGACGAACACCGCACGCTCTATGTGACCGGGGAGGAGTCGGCCTCCCAGG
TCCGCCTGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTCTACCTGGCCGCCGAGACCGATCTGGCGGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCGTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGACGGAGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGTCCACGCTTC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCCCGCCTCCTCGAACACCTCGTGGACGTCGTCCTCAGCTTC
GAGGGGGACCGTCACGCGCGGCTGCGCCTGGTGCGGGGCGTCAAGAATCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATTACGGGCCTTACGGACCCGAGCGGACTTTTCCTGACCCGTCGTGACGAACCGGTCCCGG
GCACGTGTCTGACGGTCACCTTGGAGGGCCGCCGCCCGCTGGTCGCCGAAGTGCAGGCCCTCACCGTCGACTCGCAGATC
CCCTCGCCCCGCCGTACGACGTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTACTGGAGCAGCGCGGACG
GATCAGCGCGCTGGGCAAGCGGGACATCTACTCGGCGACAGTGGGCGGGGTGAAGCTCTCGGAGCCCGCCGCGGACCTGG
CGATCGCCCTCGCGCTGGCCTCCGCGGCGAGCGACACCCCCCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCCGCCTCTCGGAGGCACACCGTCTGGGCTTCACCCACGCGCTCGT
GCCGGGCGATCCGGGCAGGGTCCCCGCGGGCATGAAGGTCCTGGAAGTGGCGGACATAGGGGACGCTCTGCGGGTCCTGC
CGCGCTCCCGTCGACGAGAGGCCCCCCGGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(81-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis SK321

42.92

96.375

0.414
  radA Streptococcus mitis NCTC 12261

42.92

96.375

0.414
  radA Streptococcus pneumoniae Rx1

42.984

95.736

0.412
  radA Streptococcus pneumoniae TIGR4

42.984

95.736

0.412
  radA Streptococcus pneumoniae D39

42.984

95.736

0.412
  radA Streptococcus pneumoniae R6

42.984

95.736

0.412