Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG827_RS27990 Genome accession   NZ_CP108068
Coordinates   5959876..5960667 (-) Length   263 a.a.
NCBI ID   WP_327278911.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00272     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5954876..5965667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG827_RS27975 (OG827_27985) - 5954907..5955620 (+) 714 WP_327278908.1 GNAT family N-acetyltransferase -
  OG827_RS27980 (OG827_27990) - 5955797..5957710 (+) 1914 WP_328763961.1 IucA/IucC family siderophore biosynthesis protein -
  OG827_RS27985 (OG827_27995) - 5957763..5959733 (+) 1971 WP_328763963.1 ATP-dependent DNA helicase -
  OG827_RS27990 (OG827_28000) dinR/lexA 5959876..5960667 (-) 792 WP_327278911.1 transcriptional repressor LexA Regulator
  OG827_RS27995 (OG827_28005) nrdR 5961140..5961652 (+) 513 WP_327278912.1 transcriptional regulator NrdR -
  OG827_RS28000 (OG827_28010) - 5961781..5964669 (+) 2889 WP_327278913.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28557.28 Da        Isoelectric Point: 7.4758

>NTDB_id=652591 OG827_RS27990 WP_327278911.1 5959876..5960667(-) (dinR/lexA) [Streptomyces sp. NBC_00272]
MTTTADSATITAQNRSQSRHEPVHPMNDASLNQEAEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=652591 OG827_RS27990 WP_327278911.1 5959876..5960667(-) (dinR/lexA) [Streptomyces sp. NBC_00272]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACACGAGCCGGTGCATCCCATGAA
CGACGCAAGTCTGAACCAGGAGGCGGAGCCCGCACGCCCCGCACGCTCGCTTCCAGGGCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCGGTGCAGCGGCGGGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACGTCGTCGGTCGCGCACCAGCTCATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTACGCGGCTCCGACCAGCCCAGCTCGCAGCCGACGG
ACACCACCGGCAAGCCCGCCGCCTCGTACGTCCCCCTGGTCGGGCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAA
TCGGTGGAGGACGTGTTCCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTCTTCGTCCTCAAGGTCGTAGGCGACTC
GATGATCGAGGCCGCGATCTGCGACGGCGACTGGGTCACGGTCCGTCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGG
CTGCGATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCCGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376