Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LVJ79_RS05475 Genome accession   NZ_CP091518
Coordinates   1033907..1034359 (-) Length   150 a.a.
NCBI ID   WP_003787023.1    Uniprot ID   A0AAX2J405
Organism   Kingella kingae strain 4177/66     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028907..1039359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS05455 (LVJ79_05455) - 1029340..1029945 (+) 606 WP_003787028.1 hypothetical protein -
  LVJ79_RS05460 (LVJ79_05460) - 1030002..1030304 (-) 303 WP_019389050.1 HU family DNA-binding protein -
  LVJ79_RS05465 (LVJ79_05465) lon 1030492..1032918 (-) 2427 WP_003787025.1 endopeptidase La -
  LVJ79_RS05470 (LVJ79_05470) - 1033221..1033661 (-) 441 WP_003787024.1 CZB domain-containing protein -
  LVJ79_RS05475 (LVJ79_05475) recX 1033907..1034359 (-) 453 WP_003787023.1 recombination regulator RecX Regulator
  LVJ79_RS05480 (LVJ79_05480) - 1034520..1034999 (-) 480 WP_003787019.1 hypothetical protein -
  LVJ79_RS05485 (LVJ79_05485) - 1034992..1036299 (-) 1308 WP_003787017.1 homoserine dehydrogenase -
  LVJ79_RS05490 (LVJ79_05490) - 1036399..1036758 (+) 360 WP_003787016.1 Mth938-like domain-containing protein -
  LVJ79_RS05495 (LVJ79_05495) dapE 1036825..1037949 (-) 1125 WP_003787015.1 succinyl-diaminopimelate desuccinylase -
  LVJ79_RS05500 (LVJ79_05500) - 1037986..1039143 (-) 1158 WP_003787013.1 glycerate kinase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17520.83 Da        Isoelectric Point: 9.8887

>NTDB_id=651984 LVJ79_RS05475 WP_003787023.1 1033907..1034359(-) (recX) [Kingella kingae strain 4177/66]
MKTEKSLRARAMEMMSRREMSQAELRAKLLPHANDSDELDAVLAEFAKNNWQSDERFAEAFVRSKSSKHGAGRLRQELRQ
RGVSAELIQQYLPDRETELDNAIEVARKKFKQPAQNRQEWDKQMRFMLYRGFAMATAQAALKRAWADDEE

Nucleotide


Download         Length: 453 bp        

>NTDB_id=651984 LVJ79_RS05475 WP_003787023.1 1033907..1034359(-) (recX) [Kingella kingae strain 4177/66]
ATGAAAACCGAAAAATCACTCCGCGCCCGAGCGATGGAAATGATGTCGCGCCGTGAAATGAGCCAAGCCGAATTACGCGC
TAAATTGTTGCCCCACGCCAACGATAGCGATGAATTGGACGCGGTGTTGGCAGAATTTGCGAAAAACAACTGGCAATCGG
ACGAGCGATTTGCAGAAGCGTTTGTTCGCAGCAAAAGCAGTAAACACGGCGCAGGACGTTTGCGCCAAGAATTGCGACAA
CGCGGCGTATCGGCAGAATTGATTCAGCAATATTTGCCCGACCGCGAAACAGAATTGGATAACGCAATAGAAGTCGCCCG
CAAAAAATTCAAGCAGCCTGCACAAAATCGGCAGGAATGGGACAAGCAAATGCGTTTTATGTTGTATCGCGGTTTTGCAA
TGGCAACGGCGCAGGCTGCTTTGAAACGCGCTTGGGCAGACGATGAAGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(34-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

54.667

100

0.547