Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ86_RS09860 Genome accession   NZ_CP091510
Coordinates   2148707..2149003 (-) Length   98 a.a.
NCBI ID   WP_047760964.1    Uniprot ID   A0A0J0YSA5
Organism   Neisseria arctica strain KH1503     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2143707..2154003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS09850 (LVJ86_09850) speA 2145445..2147343 (-) 1899 WP_047760963.1 arginine decarboxylase -
  LVJ86_RS09855 (LVJ86_09855) - 2147539..2148047 (+) 509 Protein_1912 transposase -
  LVJ86_RS09860 (LVJ86_09860) comE 2148707..2149003 (-) 297 WP_047760964.1 ComEA family DNA-binding protein Machinery gene
  LVJ86_RS09865 (LVJ86_09865) - 2149327..2149833 (+) 507 Protein_1914 thiamine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10331.03 Da        Isoelectric Point: 10.5920

>NTDB_id=651873 LVJ86_RS09860 WP_047760964.1 2148707..2149003(-) (comE) [Neisseria arctica strain KH1503]
MKKIIFVVLSFFNIGWAMAAVNINSATAEELKALPGIGAAKAAAIVEYRQQNGNFKTVDDLKNVKGIGDSIVNRLRDEAT
VGAATSAGKKAVPAIKNK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=651873 LVJ86_RS09860 WP_047760964.1 2148707..2149003(-) (comE) [Neisseria arctica strain KH1503]
ATGAAAAAAATCATTTTTGTGGTATTGTCATTTTTTAATATAGGATGGGCAATGGCCGCGGTAAATATTAATAGTGCAAC
AGCAGAAGAATTAAAGGCCTTACCAGGTATAGGTGCGGCAAAAGCAGCAGCGATTGTTGAATATCGTCAACAAAATGGAA
ACTTCAAAACAGTAGATGACTTGAAGAATGTGAAGGGGATCGGCGATAGTATCGTAAATCGCTTGCGGGATGAGGCAACA
GTTGGGGCTGCTACTTCTGCAGGGAAAAAGGCTGTACCTGCTATTAAAAATAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YSA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

52.525

100

0.531
  comE Neisseria gonorrhoeae MS11

52.525

100

0.531
  comE Neisseria gonorrhoeae MS11

52.525

100

0.531
  comE Neisseria gonorrhoeae MS11

52.525

100

0.531
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

82.653

0.398
  comEA Acinetobacter baylyi ADP1

59.016

62.245

0.367