Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L3V45_RS07110 Genome accession   NZ_CP091421
Coordinates   1359912..1360196 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus sp. R45     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1354912..1365196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS07090 (L3V45_07090) - 1356157..1357065 (+) 909 WP_234949664.1 ketopantoate reductase family protein -
  L3V45_RS07095 (L3V45_07095) - 1357097..1358329 (-) 1233 WP_234949665.1 aminopeptidase -
  L3V45_RS07100 (L3V45_07100) - 1358430..1358564 (-) 135 WP_003154559.1 protein YkpC -
  L3V45_RS07105 (L3V45_07105) mreBH 1358636..1359643 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  L3V45_RS07110 (L3V45_07110) abrB 1359912..1360196 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L3V45_RS07115 (L3V45_07115) - 1360369..1361673 (+) 1305 WP_014304932.1 ATP-binding protein -
  L3V45_RS07120 (L3V45_07120) - 1361675..1362502 (+) 828 WP_025851463.1 gamma-glutamylcyclotransferase family protein -
  L3V45_RS07125 (L3V45_07125) ktrC 1362543..1363208 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  L3V45_RS07130 (L3V45_07130) ade 1363357..1365090 (+) 1734 WP_236837317.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=650933 L3V45_RS07110 WP_003154557.1 1359912..1360196(+) (abrB) [Bacillus sp. R45]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=650933 L3V45_RS07110 WP_003154557.1 1359912..1360196(+) (abrB) [Bacillus sp. R45]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543