Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHS16_RS18110 Genome accession   NZ_CP107996
Coordinates   4006519..4007499 (+) Length   326 a.a.
NCBI ID   WP_328538249.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4001519..4012499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS18085 (OHS16_18085) - 4002051..4002701 (+) 651 WP_328538244.1 TetR/AcrR family transcriptional regulator -
  OHS16_RS18090 (OHS16_18090) - 4002768..4004303 (+) 1536 WP_328538245.1 MFS transporter -
  OHS16_RS18095 (OHS16_18095) - 4004364..4004870 (-) 507 WP_328538246.1 MarR family transcriptional regulator -
  OHS16_RS18100 (OHS16_18100) - 4004962..4005747 (+) 786 WP_328538247.1 class III extradiol ring-cleavage dioxygenase -
  OHS16_RS18105 (OHS16_18105) - 4005800..4006336 (-) 537 WP_328538248.1 N-acetyltransferase family protein -
  OHS16_RS18110 (OHS16_18110) rpoS 4006519..4007499 (+) 981 WP_328538249.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHS16_RS18115 (OHS16_18115) - 4007562..4008533 (-) 972 WP_328538250.1 WYL domain-containing protein -
  OHS16_RS18120 (OHS16_18120) - 4008596..4010107 (+) 1512 WP_328538251.1 MFS transporter -
  OHS16_RS18125 (OHS16_18125) - 4010345..4011106 (+) 762 WP_328538252.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHS16_RS18130 (OHS16_18130) pfkB 4011103..4012056 (+) 954 WP_328538253.1 1-phosphofructokinase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36450.16 Da        Isoelectric Point: 5.3606

>NTDB_id=650933 OHS16_RS18110 WP_328538249.1 4006519..4007499(+) (rpoS) [Streptomyces sp. NBC_00344]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQDIEAGVYAQQILDGSVQSKAGGASREEL
EALVSASDRAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHSEIAAELDAKPERVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDDLIGKLDHRTASIIKMRFGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMAHDT
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=650933 OHS16_RS18110 WP_328538249.1 4006519..4007499(+) (rpoS) [Streptomyces sp. NBC_00344]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGCGAGATCGCCGACCGCGA
CCTGGTCGGCATGTATCTCGACGAAATCGCCCGTACCCCGCTGCTCGACGCAGCCAAGGAGGTCGAGCTGTCGCAGGACA
TCGAGGCCGGGGTGTACGCCCAGCAGATTCTCGACGGTTCTGTGCAGAGCAAGGCGGGTGGTGCCTCCCGTGAGGAGCTG
GAGGCGCTGGTTTCCGCCAGTGACCGGGCCAAGGATGTCTTCATCCGGTCCAACCTGCGGCTCGTGGTGGCCGTCGCCCG
GCGGTATCCGCGTGCCGGACTGCCGTTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGGTGCGTGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCGACCTACGCGACCTGGTGGATCAGGCAGGCCATCACCAGGTCGATAGCGGAC
CAGTCCCGCACGATCAGGCTTCCTGTCCACCTGGTGGAGGAGCTCGGCCGTATCCGCCGTGTGCAGCGTGAGTTCAACCG
CGAGCACGGCCGCGACCCGGAGCACTCCGAGATCGCAGCCGAGCTGGACGCCAAGCCCGAGCGGGTGAGCGACGTACTGG
ACTGGGCGCGTGACCCGGTCAGCCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAGTTCGGCGACCTGCTCGAGGAC
ACATCGGCGGTGTCCCCCGAGCAGTCCGTCATGACGCTGCTGCGCAGCGAGGAGCTCGACGACCTCATAGGCAAGCTCGA
CCACCGGACCGCCTCGATCATCAAGATGCGTTTCGGTATCGAGGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGCCTCACCCGCGAGCGGATCCGTCAGATCGAGAAGCATGCCCTGCTCGAACTGAAGAAGATGGCGCACGACACG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.333

92.025

0.362