Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   L2O48_RS08365 Genome accession   NZ_CP091185
Coordinates   1747548..1748066 (+) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio anguillarum strain J382     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742548..1753066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2O48_RS08355 (L2O48_08355) - 1742960..1745815 (+) 2856 WP_013857697.1 pitrilysin family protein -
  L2O48_RS08360 (L2O48_08360) gshA 1745918..1747483 (+) 1566 WP_029189845.1 glutamate--cysteine ligase -
  L2O48_RS08365 (L2O48_08365) luxS 1747548..1748066 (+) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  L2O48_RS08370 (L2O48_08370) - 1748150..1749424 (-) 1275 WP_017046996.1 CNNM domain-containing protein -
  L2O48_RS08375 (L2O48_08375) - 1749508..1750302 (-) 795 WP_026027563.1 inner membrane protein YpjD -
  L2O48_RS08380 (L2O48_08380) ffh 1750605..1751987 (+) 1383 WP_013857692.1 signal recognition particle protein -
  L2O48_RS08385 (L2O48_08385) rpsP 1752202..1752450 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  L2O48_RS08390 (L2O48_08390) rimM 1752480..1753034 (+) 555 WP_013857691.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=648229 L2O48_RS08365 WP_010319518.1 1747548..1748066(+) (luxS) [Vibrio anguillarum strain J382]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=648229 L2O48_RS08365 WP_010319518.1 1747548..1748066(+) (luxS) [Vibrio anguillarum strain J382]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCAGAAAAAGGGATCC
ACACTTTAGAACATTTATATGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGATGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACAGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878