Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHN37_RS44055 Genome accession   NZ_CP107878
Coordinates   9605656..9606327 (+) Length   223 a.a.
NCBI ID   WP_266524591.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00485     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9600656..9611327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN37_RS44025 (OHN37_43985) - 9600907..9601968 (+) 1062 WP_266593780.1 Dyp-type peroxidase -
  OHN37_RS44030 (OHN37_43990) - 9601965..9602777 (+) 813 WP_266524582.1 family 1 encapsulin nanocompartment shell protein -
  OHN37_RS44035 (OHN37_43995) - 9602873..9603331 (-) 459 WP_266524585.1 SRPBCC family protein -
  OHN37_RS44040 (OHN37_44000) - 9603670..9604023 (+) 354 WP_266593786.1 VOC family protein -
  OHN37_RS44045 (OHN37_44005) - 9604318..9604536 (+) 219 WP_266524589.1 hypothetical protein -
  OHN37_RS44050 (OHN37_44010) - 9604571..9605320 (-) 750 WP_266524072.1 transposase -
  OHN37_RS44055 (OHN37_44015) dinR/lexA 9605656..9606327 (+) 672 WP_266524591.1 transcriptional repressor LexA Regulator
  OHN37_RS44065 (OHN37_44025) - 9607128..9607379 (+) 252 Protein_8722 AraC family transcriptional regulator -
  OHN37_RS44070 (OHN37_44030) - 9607928..9608692 (+) 765 WP_266524593.1 hypothetical protein -
  OHN37_RS44075 (OHN37_44035) - 9608834..9609595 (-) 762 WP_327667777.1 transposase -
  OHN37_RS44080 (OHN37_44040) - 9609731..9611005 (+) 1275 WP_327667778.1 MFS transporter -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24278.62 Da        Isoelectric Point: 4.9902

>NTDB_id=647768 OHN37_RS44055 WP_266524591.1 9605656..9606327(+) (dinR/lexA) [Streptomyces sp. NBC_00485]
MENTTPARRGRPQGPGTAEGELTGRQAAIVRYITETVDRQGYPPSMREIGKAVDLNSTSSVAYQLLALERKGILYRDPHR
PRAYRVRPSWAPDLDGKAVEQVDVPLVGRIAAGAPLLADEMVEDVYTLPRQVVGDGEVFALTVSGDSMVDAAICDGDIVA
VKRQDSADHGDIVAALLEDEATVKVLRRQDGQVWLMPRNPAYEPIRGDEARILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=647768 OHN37_RS44055 WP_266524591.1 9605656..9606327(+) (dinR/lexA) [Streptomyces sp. NBC_00485]
ATGGAGAACACCACGCCCGCCCGCCGGGGCCGACCTCAAGGCCCCGGCACTGCCGAAGGAGAGCTGACGGGCCGCCAGGC
GGCCATCGTCCGCTACATCACGGAGACGGTCGACCGACAGGGATACCCGCCGTCGATGCGGGAGATCGGCAAGGCCGTAG
ACCTCAACAGCACCTCCTCGGTCGCCTACCAACTGCTCGCGCTCGAGCGCAAAGGCATCCTCTATCGCGACCCGCACCGG
CCTCGCGCCTACCGGGTCAGGCCGTCATGGGCGCCTGACCTCGATGGCAAAGCCGTGGAACAGGTCGATGTGCCGCTCGT
CGGCCGGATCGCCGCCGGCGCGCCCCTGCTCGCCGACGAGATGGTCGAGGACGTCTACACCCTGCCCCGTCAGGTCGTGG
GCGACGGCGAGGTGTTCGCGCTGACGGTGTCCGGCGACAGCATGGTCGACGCGGCGATCTGCGACGGAGACATCGTCGCC
GTCAAACGACAGGACAGCGCCGATCACGGCGACATCGTCGCCGCGCTCCTTGAGGACGAGGCCACTGTCAAAGTACTGCG
CCGGCAGGACGGGCAGGTGTGGCTCATGCCCCGCAATCCGGCCTACGAGCCGATCCGCGGCGACGAGGCGCGGATCCTCG
GCAAGGTCGTCGGCGTTCTCCGCGTTCTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.366

91.928

0.417