Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1S38_RS15175 Genome accession   NZ_CP091081
Coordinates   3042595..3043221 (-) Length   208 a.a.
NCBI ID   WP_059359997.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain GD21SC1505     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037595..3048221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1S38_RS15160 (L1S38_15160) helD 3037832..3039886 (-) 2055 WP_059359999.1 DNA helicase IV -
  L1S38_RS15165 (L1S38_15165) - 3040010..3040456 (+) 447 WP_023343701.1 YccF domain-containing protein -
  L1S38_RS15170 (L1S38_15170) yccS 3040476..3042638 (+) 2163 WP_023292863.1 YccS family putative transporter -
  L1S38_RS15175 (L1S38_15175) sxy/tfoX 3042595..3043221 (-) 627 WP_059359997.1 TfoX/Sxy family DNA transformation protein Regulator
  L1S38_RS15180 (L1S38_15180) sulA 3043439..3043948 (+) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  L1S38_RS15185 (L1S38_15185) ompA 3044303..3045358 (+) 1056 WP_023292865.1 porin OmpA -
  L1S38_RS15190 (L1S38_15190) matP 3045423..3045875 (-) 453 WP_008499929.1 macrodomain Ter protein MatP -
  L1S38_RS15195 (L1S38_15195) - 3046062..3047822 (+) 1761 WP_059359994.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23912.51 Da        Isoelectric Point: 9.6439

>NTDB_id=647556 L1S38_RS15175 WP_059359997.1 3042595..3043221(-) (sxy/tfoX) [Enterobacter roggenkampii strain GD21SC1505]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=647556 L1S38_RS15175 WP_059359997.1 3042595..3043221(-) (sxy/tfoX) [Enterobacter roggenkampii strain GD21SC1505]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGTGCAAAGAAT
AAGGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAATCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567