Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG956_RS38780 Genome accession   NZ_CP107796
Coordinates   8666414..8667100 (+) Length   228 a.a.
NCBI ID   WP_330342674.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8661414..8672100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS38755 (OG956_38760) - 8661867..8662610 (-) 744 WP_330342670.1 hypothetical protein -
  OG956_RS38760 (OG956_38765) - 8662843..8664111 (-) 1269 WP_330342671.1 competence protein CoiA family protein -
  OG956_RS38765 (OG956_38770) - 8664352..8664591 (+) 240 WP_330342672.1 hypothetical protein -
  OG956_RS38770 (OG956_38775) - 8664669..8664914 (-) 246 WP_330342673.1 hypothetical protein -
  OG956_RS38775 (OG956_38780) - 8665295..8666269 (+) 975 WP_330343055.1 hypothetical protein -
  OG956_RS38780 (OG956_38785) dinR/lexA 8666414..8667100 (+) 687 WP_330342674.1 transcriptional repressor LexA Regulator
  OG956_RS38785 (OG956_38790) - 8667189..8667371 (+) 183 WP_330342675.1 hypothetical protein -
  OG956_RS38790 (OG956_38795) - 8667491..8667694 (+) 204 WP_330342676.1 cold-shock protein -
  OG956_RS38800 (OG956_38805) - 8667919..8668317 (-) 399 WP_330342677.1 hypothetical protein -
  OG956_RS38805 (OG956_38810) - 8668317..8668592 (-) 276 WP_330342678.1 hypothetical protein -
  OG956_RS38810 (OG956_38815) - 8668741..8670708 (-) 1968 WP_330343056.1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24667.33 Da        Isoelectric Point: 8.1310

>NTDB_id=646385 OG956_RS38780 WP_330342674.1 8666414..8667100(+) (dinR/lexA) [Streptomyces sp. NBC_00557]
MHLTETTGRAGRPRGVVTGPDGLTARQMAIVRFIESTVARQGYPPSMREIGEAVRLKSTSSVAHQLLALERKGVLYRDPH
RPRAYRVRPHRDTGFGESPADAFPQAADVPLVGRIAAGAPLLAEESVEDVLLLPRRLVGEGRLFALRVVGDSMVEAAICD
GDIVTVRRQDSADHGDVVAALIDGEATVKRLRREDGHVWLMPHNPAYAPILADEAAILGKVVAVLRSL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=646385 OG956_RS38780 WP_330342674.1 8666414..8667100(+) (dinR/lexA) [Streptomyces sp. NBC_00557]
ATGCACCTCACTGAAACGACTGGTCGGGCCGGGCGCCCGCGGGGAGTCGTCACCGGCCCCGACGGTCTCACCGCTCGGCA
GATGGCCATCGTGCGTTTTATCGAGAGCACCGTCGCCCGTCAGGGATACCCGCCCTCGATGCGCGAGATCGGCGAGGCGG
TCCGGCTCAAGAGCACCTCCTCCGTCGCGCACCAGCTCCTCGCCCTGGAGCGCAAGGGCGTCCTCTACCGCGATCCCCAT
CGCCCCCGCGCCTATCGCGTCAGGCCGCACCGGGACACCGGCTTCGGTGAAAGCCCGGCCGATGCCTTCCCTCAGGCGGC
CGACGTGCCCCTCGTCGGCCGGATCGCCGCAGGCGCACCGCTCCTGGCCGAGGAATCGGTGGAGGACGTACTGCTGCTGC
CCCGGCGTCTCGTCGGGGAGGGCCGTCTGTTCGCGTTGCGAGTCGTGGGGGACAGCATGGTCGAGGCGGCGATCTGCGAC
GGTGACATCGTCACCGTCCGCCGTCAGGACTCCGCCGACCACGGCGACGTCGTGGCCGCCCTCATCGACGGCGAGGCGAC
AGTCAAACGGCTGCGCCGTGAGGACGGCCATGTCTGGCTGATGCCGCACAACCCGGCCTACGCACCGATCCTGGCTGACG
AGGCAGCCATTCTCGGCAAAGTCGTCGCCGTGCTGCGCAGCCTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(22-84)

Peptidase S24-like (Peptidase_S24)

(110-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.269

91.228

0.395