Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y94_RS19225 Genome accession   NZ_CP090782
Coordinates   1371061..1372437 (+) Length   458 a.a.
NCBI ID   WP_006411691.1    Uniprot ID   -
Organism   Burkholderia multivorans strain 2004Ycf1069VI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1366061..1377437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y94_RS19205 (L0Y94_19205) - 1366591..1367567 (+) 977 Protein_1299 DUF1853 family protein -
  L0Y94_RS19210 (L0Y94_19210) thiD 1367586..1368395 (-) 810 WP_006407725.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Y94_RS19215 (L0Y94_19215) lplT 1368454..1369761 (-) 1308 WP_006407724.1 lysophospholipid transporter LplT -
  L0Y94_RS19220 (L0Y94_19220) alr 1369980..1371050 (+) 1071 WP_006402626.1 alanine racemase -
  L0Y94_RS19225 (L0Y94_19225) radA 1371061..1372437 (+) 1377 WP_006411691.1 DNA repair protein RadA Machinery gene
  L0Y94_RS19230 (L0Y94_19230) - 1372573..1372839 (+) 267 WP_006407722.1 DUF2866 domain-containing protein -
  L0Y94_RS19235 (L0Y94_19235) - 1372879..1374810 (-) 1932 WP_006411689.1 ATP-binding cassette domain-containing protein -
  L0Y94_RS19240 (L0Y94_19240) - 1374946..1375425 (+) 480 WP_006402630.1 glutathione peroxidase -
  L0Y94_RS19245 (L0Y94_19245) cls 1375463..1376902 (-) 1440 WP_006407720.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48725.19 Da        Isoelectric Point: 7.1656

>NTDB_id=644777 L0Y94_RS19225 WP_006411691.1 1371061..1372437(+) (radA) [Burkholderia multivorans strain 2004Ycf1069VI]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644777 L0Y94_RS19225 WP_006411691.1 1371061..1372437(+) (radA) [Burkholderia multivorans strain 2004Ycf1069VI]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTCGCCGAATCGCCGAGCGCCCATCGCTTCCAGTCGCTCGCGAAACGTGCGC
CCGTCCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGACTCGCGCTGCTCGACGGTGCCGCGCCGGCCGCCGAGCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGTACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCGGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTTGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCGTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAACGCGCCCAAGCAGGCGATCGAGGGCCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.138

100

0.498
  radA Streptococcus pneumoniae Rx1

46.421

100

0.467
  radA Streptococcus pneumoniae D39

46.421

100

0.467
  radA Streptococcus pneumoniae R6

46.421

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.421

100

0.467
  radA Streptococcus mitis SK321

46.799

98.908

0.463
  radA Streptococcus mitis NCTC 12261

46.578

98.908

0.461