Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OIO43_RS17030 Genome accession   NZ_CP107599
Coordinates   3597461..3598096 (+) Length   211 a.a.
NCBI ID   WP_000633798.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592461..3603096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS17010 (OIO43_17010) - 3592537..3593352 (+) 816 WP_000011161.1 DsbC family protein -
  OIO43_RS17015 (OIO43_17015) - 3593597..3594898 (+) 1302 WP_000805829.1 homoserine dehydrogenase -
  OIO43_RS17020 (OIO43_17020) thrC 3594954..3596093 (+) 1140 WP_000063593.1 threonine synthase -
  OIO43_RS17025 (OIO43_17025) pbpG 3596202..3597248 (-) 1047 WP_005140205.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OIO43_RS17030 (OIO43_17030) letA 3597461..3598096 (+) 636 WP_000633798.1 response regulator Regulator
  OIO43_RS17035 (OIO43_17035) pilS 3598107..3599675 (+) 1569 WP_001160340.1 PAS domain-containing sensor histidine kinase Regulator
  OIO43_RS17040 (OIO43_17040) - 3599699..3601120 (+) 1422 WP_000840556.1 sigma-54 dependent transcriptional regulator -
  OIO43_RS17045 (OIO43_17045) - 3601124..3602308 (-) 1185 WP_000939107.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23161.81 Da        Isoelectric Point: 5.0959

>NTDB_id=644359 OIO43_RS17030 WP_000633798.1 3597461..3598096(+) (letA) [Acinetobacter baumannii strain 1326584]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMI
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=644359 OIO43_RS17030 WP_000633798.1 3597461..3598096(+) (letA) [Acinetobacter baumannii strain 1326584]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAATATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACAAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCAGAACGGGAAATGCAAGTTGCAATGATGATC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.714

99.526

0.554
  letA Legionella pneumophila strain ERS1305867

55.714

99.526

0.554