Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OIO43_RS16870 Genome accession   NZ_CP107599
Coordinates   3566038..3566364 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain 1326584     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3561038..3571364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS16850 (OIO43_16850) - 3561144..3561773 (-) 630 WP_000219967.1 FHA domain-containing protein -
  OIO43_RS16855 (OIO43_16855) gspD 3561814..3564084 (-) 2271 WP_001196430.1 type II secretion system secretin GspD -
  OIO43_RS16860 (OIO43_16860) - 3564126..3564962 (-) 837 WP_000870024.1 type II secretion system protein N -
  OIO43_RS16865 (OIO43_16865) gspN 3564962..3565705 (-) 744 WP_000730343.1 type II secretion system protein N -
  OIO43_RS16870 (OIO43_16870) hns 3566038..3566364 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  OIO43_RS16875 (OIO43_16875) - 3566559..3566723 (-) 165 Protein_3288 acyl-CoA thioesterase -
  OIO43_RS16880 (OIO43_16880) - 3566835..3567803 (+) 969 WP_005804963.1 IS30 family transposase -
  OIO43_RS16885 (OIO43_16885) - 3567811..3568089 (-) 279 Protein_3290 acyl-CoA thioesterase -
  OIO43_RS16890 (OIO43_16890) - 3568097..3569290 (-) 1194 WP_000681775.1 membrane protein -
  OIO43_RS16895 (OIO43_16895) - 3569300..3570139 (-) 840 WP_001225228.1 hypothetical protein -
  OIO43_RS16900 (OIO43_16900) - 3570148..3570915 (-) 768 WP_000897424.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=644358 OIO43_RS16870 WP_000801427.1 3566038..3566364(-) (hns) [Acinetobacter baumannii strain 1326584]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=644358 OIO43_RS16870 WP_000801427.1 3566038..3566364(-) (hns) [Acinetobacter baumannii strain 1326584]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1