Detailed information NTG0642931

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IHC88_RS01950
• Genome accession: NZ_CP090498
• Coordinates: 391200..392078 (-)
• Length: 292 a.a.
• NCBI ID: WP_237033348.1
• Uniprot ID: -
• Organism: Photobacterium damselae subsp. damselae strain CSP DAM2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 386200..397078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHC88_RS01925 (IHC88_01925)	secA	386238..388958 (+)	2721	WP_237033345.1	preprotein translocase subunit SecA	-
IHC88_RS01930 (IHC88_01930)	mutT	389052..389492 (-)	441	WP_237033346.1	8-oxo-dGTP diphosphatase MutT	-
IHC88_RS01935 (IHC88_01935)	yacG	389573..389782 (-)	210	WP_005297592.1	DNA gyrase inhibitor YacG	-
IHC88_RS01940 (IHC88_01940)	zapD	389791..390528 (-)	738	WP_005297594.1	cell division protein ZapD	-
IHC88_RS01945 (IHC88_01945)	coaE	390596..391198 (-)	603	WP_237033347.1	dephospho-CoA kinase	-
IHC88_RS01950 (IHC88_01950)	pilD	391200..392078 (-)	879	WP_237033348.1	prepilin peptidase	Machinery gene
IHC88_RS01955 (IHC88_01955)	pilC	392260..393486 (-)	1227	WP_237033349.1	type II secretion system F family protein	Machinery gene
IHC88_RS01960 (IHC88_01960)	pilB	393552..395243 (-)	1692	WP_237033350.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IHC88_RS01965 (IHC88_01965)	pilA	395244..395630 (-)	387	WP_237033351.1	pilin	Machinery gene
IHC88_RS01970 (IHC88_01970)	ampD	396025..396603 (+)	579	WP_069531889.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32496.95 Da
• Isoelectric Point: 8.0881

>NTDB_id=642931 IHC88_RS01950 WP_237033348.1 391200..392078(-) (pilD) [Photobacterium damselae subsp. damselae strain CSP DAM2]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHAPISRRYPMIELLTAALCGTVAILFPPTWWAVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWVFKLLTQKDGMGYGDFKLLAALGAWLGWQILPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide

• Length: 879 bp

>NTDB_id=642931 IHC88_RS01950 WP_237033348.1 391200..392078(-) (pilD) [Photobacterium damselae subsp. damselae strain CSP DAM2]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCCTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATTGAAGCGTTTCCGGATTTAATCA
AAGCCGATGCGAAGCTAAATACCGACACATTTAATTTAAGCGTGCCGCGTTCTCGTTGTCCTCATTGCGGTCATCTCATT
AGTGCTGTAGAAAATATCCCTGTTATTAGCTGGCTGGTATTAAAAGGGAAGTGTAAATCTTGTCACGCACCGATTAGCCG
ACGTTACCCGATGATTGAACTGTTAACTGCAGCATTGTGTGGAACGGTTGCGATCCTATTTCCACCAACTTGGTGGGCGG
TTGCAGTCATCTTTTTCACTTTTGCCTTAATTGCTCTAACTTTTATCGATATTGATAAGATGCTACTGCCTGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCGCTACAAGATTCTGTGATTGG
TGCGATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGGTCTTTAAATTATTAACCCAAAAAGACGGTATGGGTTATG
GCGACTTTAAGCTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATACTGCCTGTTGTGGTTCTGCTATCCTCTCTT
GCTGGGGCGATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCTGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.753	100	0.658
pilD	Vibrio cholerae strain A1552	62.457	100	0.627
pilD	Acinetobacter baumannii D1279779	51.673	92.123	0.476
pilD	Acinetobacter nosocomialis M2	51.673	92.123	0.476
pilD	Neisseria gonorrhoeae MS11	48.201	95.205	0.459