Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LN341_RS15425 Genome accession   NZ_CP090364
Coordinates   3318397..3319923 (-) Length   508 a.a.
NCBI ID   WP_234203756.1    Uniprot ID   -
Organism   Photobacterium sp. TLY01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3313397..3324923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN341_RS15395 (LN341_15395) - 3313750..3314016 (+) 267 WP_046222112.1 YihD family protein -
  LN341_RS15400 (LN341_15400) ccoG 3314195..3315625 (+) 1431 WP_234203752.1 cytochrome c oxidase accessory protein CcoG -
  LN341_RS15405 (LN341_15405) - 3315721..3316710 (+) 990 WP_234203753.1 serine/threonine protein kinase -
  LN341_RS15410 (LN341_15410) - 3316783..3317385 (+) 603 WP_046222109.1 thiol:disulfide interchange protein DsbA/DsbL -
  LN341_RS15415 (LN341_15415) - 3317459..3317770 (-) 312 WP_234203754.1 hypothetical protein -
  LN341_RS15420 (LN341_15420) - 3317814..3318311 (-) 498 WP_234203755.1 DUF2059 domain-containing protein -
  LN341_RS15425 (LN341_15425) comM 3318397..3319923 (-) 1527 WP_234203756.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LN341_RS15430 (LN341_15430) ilvG 3320338..3321987 (+) 1650 WP_234205076.1 acetolactate synthase 2 catalytic subunit -
  LN341_RS15435 (LN341_15435) ilvM 3321984..3322244 (+) 261 WP_027251721.1 acetolactate synthase 2 small subunit -
  LN341_RS15440 (LN341_15440) - 3322260..3323192 (+) 933 WP_046222106.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54357.34 Da        Isoelectric Point: 7.7770

>NTDB_id=641709 LN341_RS15425 WP_234203756.1 3318397..3319923(-) (comM) [Photobacterium sp. TLY01]
MTLAIVHSRACVGVDAPAVTIEVHLSNGLPAVNLVGLPETTVKEARDRVRSAIVNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPDTKLHDHEFLGELALSGELRSVKGALPAALAAKQQNRCLVLPDANGDQAALVGRDIHKSAASL
LAVCAYLCGQEALSLHCRAPGQAVPTANGRDMQDIIGQQQGKRALEIAAAGGHNLLFVGPPGTGKTMLASRLCDLLPEMD
VEEALETAAITSLTAQSLHAGNWRNRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLREPL
ESGEIVISRATSKTTFPARFQLIGALNPSPTGYYEGSQTRTNPQAILRYLGRLSGPLLDRFDMSIEIPALPRGTLAQGGD
RGETTGVIKARVQEARDRMHSRGGKINALLGTRELDQHCALTKADAEFLETALHQLGLSIRAYHRIIKVARTIADLAGKP
DIERAHLAEALGYRAMDRLLKQITSQVV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=641709 LN341_RS15425 WP_234203756.1 3318397..3319923(-) (comM) [Photobacterium sp. TLY01]
ATGACGCTGGCGATAGTGCACAGCAGGGCTTGTGTCGGGGTGGATGCGCCGGCGGTTACCATCGAGGTTCACCTCAGTAA
TGGTCTGCCGGCGGTTAATCTGGTGGGGTTGCCTGAGACCACAGTGAAGGAGGCCAGAGACCGAGTCAGAAGCGCGATCG
TGAATGCCAATTTCGAATTTCCGTCGCGGCGGATCACGGTCAATCTGGCTCCGGCCGATCTGCCCAAAGAAGGCGGGCGT
TTTGATTTGCCCATTGCGCTGGGTATTTTGGCCGCATCGGGCCAGATCCCCGACACGAAGCTGCACGATCATGAATTTTT
GGGCGAACTGGCCCTGTCTGGCGAGTTACGTTCCGTCAAGGGTGCCCTGCCAGCGGCGTTGGCTGCTAAGCAGCAGAACC
GCTGCCTGGTGCTGCCCGATGCCAATGGCGATCAGGCAGCGCTGGTCGGCAGAGACATACACAAATCTGCAGCCAGTTTA
CTGGCGGTGTGTGCCTATCTGTGTGGTCAGGAAGCGCTGTCGCTGCATTGTCGCGCACCCGGTCAGGCGGTGCCGACGGC
CAACGGCCGCGATATGCAGGACATCATAGGCCAGCAGCAGGGCAAAAGGGCACTGGAGATCGCCGCAGCAGGCGGTCACA
ACTTATTGTTCGTCGGTCCGCCCGGCACCGGCAAGACTATGCTGGCCTCGCGGTTGTGCGATTTACTGCCTGAGATGGAT
GTCGAGGAGGCATTGGAAACCGCTGCCATTACCTCCCTGACCGCGCAGTCACTCCATGCCGGCAATTGGCGCAACCGTCC
GTTTCGCGCCCCGCACCATTCCAGCTCGATGGCGGCGCTGGTGGGCGGCGGCTCCATCCCCCGCCCCGGTGAAATTTCAC
TGGCCCATAACGGCATTCTGTTTTTAGATGAAATGCCGGAATTTGAACGCAAAGTGCTGGATTCTTTACGGGAACCGCTG
GAATCTGGCGAGATCGTGATTTCCCGTGCCACCAGCAAAACCACCTTTCCGGCGCGGTTTCAGCTTATTGGCGCGCTCAA
TCCCAGCCCGACCGGTTACTACGAAGGCAGCCAGACCCGCACCAATCCGCAGGCGATCCTGCGCTATCTGGGGCGCTTGT
CCGGCCCTTTGCTGGACAGGTTTGATATGTCGATTGAGATCCCTGCCCTGCCCCGTGGCACCCTGGCTCAGGGTGGCGAC
AGAGGGGAAACCACCGGGGTGATCAAAGCACGGGTGCAGGAAGCACGAGACCGGATGCACAGCCGCGGCGGCAAGATCAA
TGCCCTGCTCGGTACCCGCGAACTGGACCAGCACTGCGCGCTGACCAAAGCCGACGCCGAGTTCCTCGAAACCGCCCTGC
ACCAGCTCGGCCTGTCAATCCGCGCTTATCACCGGATCATCAAAGTCGCCCGCACCATCGCCGATCTGGCCGGCAAACCT
GACATTGAACGAGCCCATCTGGCCGAAGCCTTAGGCTACCGTGCCATGGATCGCCTGCTGAAGCAGATCACCAGCCAGGT
GGTGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

77.165

100

0.772
  comM Vibrio campbellii strain DS40M4

76.772

100

0.768
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Haemophilus influenzae Rd KW20

62.205

100

0.622
  comM Legionella pneumophila str. Paris

50.201

98.031

0.492
  comM Legionella pneumophila strain ERS1305867

50.201

98.031

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.606

0.423