Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ODQ18_RS13240 Genome accession   NZ_CP107039
Coordinates   2544312..2544746 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain 11060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2539312..2549746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS13225 (ODQ18_13225) epsK 2539941..2540792 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  ODQ18_RS13230 (ODQ18_13230) ephJ 2540773..2541861 (-) 1089 WP_003246551.1 lipoprotein -
  ODQ18_RS13235 (ODQ18_13235) topB 2542064..2544247 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  ODQ18_RS13240 (ODQ18_13240) lrpC 2544312..2544746 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ODQ18_RS13245 (ODQ18_13245) ydzA 2544931..2545221 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  ODQ18_RS13250 (ODQ18_13250) amj 2545265..2546074 (-) 810 WP_003234394.1 lipid II flippase Amj -
  ODQ18_RS13255 (ODQ18_13255) ydaG 2546580..2547002 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ODQ18_RS13260 (ODQ18_13260) ydaF 2547080..2547631 (-) 552 WP_041850710.1 GNAT family N-acetyltransferase -
  ODQ18_RS13265 (ODQ18_13265) lyxE 2547719..2548222 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ODQ18_RS13270 (ODQ18_13270) ydaD 2548238..2549098 (-) 861 WP_003234401.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=640290 ODQ18_RS13240 WP_003246585.1 2544312..2544746(-) (lrpC) [Bacillus subtilis strain 11060]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=640290 ODQ18_RS13240 WP_003246585.1 2544312..2544746(-) (lrpC) [Bacillus subtilis strain 11060]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1