Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ODQ18_RS09555 Genome accession   NZ_CP107039
Coordinates   1830563..1831480 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain 11060     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1825563..1836480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS09530 (ODQ18_09530) spx 1825921..1826316 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  ODQ18_RS09535 (ODQ18_09535) yjbC 1826497..1827075 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ODQ18_RS09540 (ODQ18_09540) yjbB 1827240..1828457 (-) 1218 WP_128472215.1 MFS transporter -
  ODQ18_RS09545 (ODQ18_09545) oppF 1828563..1829480 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ODQ18_RS09550 (ODQ18_09550) oppD 1829482..1830558 (-) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ODQ18_RS09555 (ODQ18_09555) amiD 1830563..1831480 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ODQ18_RS09560 (ODQ18_09560) oppB 1831484..1832419 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  ODQ18_RS09565 (ODQ18_09565) oppA 1832527..1834164 (-) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ODQ18_RS09570 (ODQ18_09570) trpS 1834908..1835900 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=640267 ODQ18_RS09555 WP_003232954.1 1830563..1831480(-) (amiD) [Bacillus subtilis strain 11060]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=640267 ODQ18_RS09555 WP_003232954.1 1830563..1831480(-) (amiD) [Bacillus subtilis strain 11060]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAATATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTTTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364