Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ODQ18_RS02920 Genome accession   NZ_CP107039
Coordinates   532483..532893 (+) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   P42983
Organism   Bacillus subtilis strain 11060     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 527483..537893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS02885 (ODQ18_02885) arsR 527648..527965 (+) 318 WP_029318103.1 arsenical resistance operon transcriptional regulator ArsR -
  ODQ18_RS02890 (ODQ18_02890) arsK 528024..528464 (+) 441 WP_032722151.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  ODQ18_RS02895 (ODQ18_02895) acr3 528487..529527 (+) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  ODQ18_RS02900 (ODQ18_02900) arsC 529539..529958 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  ODQ18_RS02905 (ODQ18_02905) - 530313..530491 (+) 179 Protein_555 hypothetical protein -
  ODQ18_RS02910 (ODQ18_02910) spoIVCA 530449..531909 (+) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  ODQ18_RS02915 (ODQ18_02915) - 531937..532287 (-) 351 Protein_557 sigma-70 family RNA polymerase sigma factor -
  ODQ18_RS02920 (ODQ18_02920) nucA/comI 532483..532893 (+) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  ODQ18_RS02925 (ODQ18_02925) yqeB 532926..533648 (-) 723 WP_032726205.1 hypothetical protein -
  ODQ18_RS02930 (ODQ18_02930) gnd 533900..534793 (+) 894 WP_041850033.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  ODQ18_RS02935 (ODQ18_02935) yqeD 534813..535439 (-) 627 WP_041850032.1 TVP38/TMEM64 family protein -
  ODQ18_RS02940 (ODQ18_02940) cwlH 535626..536378 (+) 753 WP_021480067.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  ODQ18_RS02945 (ODQ18_02945) yqeF 536630..537361 (+) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  ODQ18_RS02950 (ODQ18_02950) - 537666..537806 (-) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=640212 ODQ18_RS02920 WP_009967785.1 532483..532893(+) (nucA/comI) [Bacillus subtilis strain 11060]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=640212 ODQ18_RS02920 WP_009967785.1 532483..532893(+) (nucA/comI) [Bacillus subtilis strain 11060]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCAATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42983

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529