Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LXA46_RS09125 Genome accession   NZ_CP089948
Coordinates   1821675..1822496 (-) Length   273 a.a.
NCBI ID   WP_000601684.1    Uniprot ID   A0A4M9J287
Organism   Streptococcus pneumoniae TIGR4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1816675..1827496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA46_RS09080 (LXA46_09070) - 1817167..1817484 (-) 318 WP_000615765.1 thioredoxin family protein -
  LXA46_RS09085 (LXA46_09075) - 1817481..1817780 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  LXA46_RS10970 - 1817874..1818005 (+) 132 WP_001811306.1 hypothetical protein -
  LXA46_RS09090 (LXA46_09080) - 1818030..1818110 (-) 81 WP_223200463.1 hypothetical protein -
  LXA46_RS09095 (LXA46_09085) - 1818117..1818308 (-) 192 WP_000291826.1 cell wall-binding protein -
  LXA46_RS09100 (LXA46_09090) - 1818469..1819143 (-) 675 WP_000725749.1 membrane protein -
  LXA46_RS09105 (LXA46_09095) - 1819149..1819595 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  LXA46_RS09110 (LXA46_09100) - 1819709..1820212 (-) 504 WP_000800931.1 phosphatase PAP2 family protein -
  LXA46_RS09115 (LXA46_09105) - 1820209..1820571 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  LXA46_RS09120 (LXA46_09110) rcrQ 1820637..1821668 (-) 1032 WP_000506419.1 ATP-binding cassette domain-containing protein Regulator
  LXA46_RS09125 (LXA46_09115) rcrP 1821675..1822496 (-) 822 WP_000601684.1 ABC transporter permease Regulator
  LXA46_RS09130 (LXA46_09120) - 1822513..1822984 (-) 472 Protein_1816 MarR family winged helix-turn-helix transcriptional regulator -
  LXA46_RS09135 (LXA46_09125) - 1823108..1823824 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LXA46_RS09140 (LXA46_09130) ply 1824705..1826120 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  LXA46_RS09145 (LXA46_09135) - 1826131..1826541 (-) 411 WP_000595758.1 hypothetical protein -
  LXA46_RS09150 (LXA46_09140) - 1826534..1827142 (-) 609 WP_000083614.1 hypothetical protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30566.08 Da        Isoelectric Point: 5.9310

>NTDB_id=639351 LXA46_RS09125 WP_000601684.1 1821675..1822496(-) (rcrP) [Streptococcus pneumoniae TIGR4]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQSASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVAVIINVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=639351 LXA46_RS09125 WP_000601684.1 1821675..1822496(-) (rcrP) [Streptococcus pneumoniae TIGR4]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGTCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTATCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4M9J287

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.544

100

0.601