Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LUS72_RS06455 Genome accession   NZ_CP089518
Coordinates   1256205..1256528 (-) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus cereus strain PT1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251205..1261528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS06430 - 1251385..1252671 (+) 1287 WP_097830127.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LUS72_RS06435 sipW 1252875..1253444 (+) 570 WP_097830128.1 signal peptidase I SipW -
  LUS72_RS06440 - 1253506..1254093 (+) 588 WP_097830129.1 CalY family protein -
  LUS72_RS06445 - 1254255..1255103 (+) 849 WP_264448709.1 DUF4047 domain-containing protein -
  LUS72_RS06450 calY 1255534..1256127 (+) 594 WP_097830131.1 biofilm matrix protein CalY -
  LUS72_RS06455 sinR 1256205..1256528 (-) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  LUS72_RS06460 - 1256608..1256742 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  LUS72_RS06465 inhA1 1257085..1259475 (+) 2391 WP_097830132.1 M6 family metalloprotease immune inhibitor InhA1 -
  LUS72_RS06470 - 1259647..1261014 (+) 1368 WP_097830133.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=637875 LUS72_RS06455 WP_002011473.1 1256205..1256528(-) (sinR) [Bacillus cereus strain PT1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=637875 LUS72_RS06455 WP_002011473.1 1256205..1256528(-) (sinR) [Bacillus cereus strain PT1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATCCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATCTAGACTCCGAATGGACCCAGCTTGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682