Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   N8I87_RS38635 Genome accession   NZ_CP106798
Coordinates   8534680..8535351 (+) Length   223 a.a.
NCBI ID   WP_263215546.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8529680..8540351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS38610 (N8I87_38610) - 8530428..8530805 (-) 378 WP_263215542.1 peptidase inhibitor family I36 protein -
  N8I87_RS38615 (N8I87_38615) - 8531084..8532049 (+) 966 WP_317633530.1 winged helix-turn-helix domain-containing protein -
  N8I87_RS38620 (N8I87_38620) - 8532121..8532759 (+) 639 WP_263215544.1 HAD family hydrolase -
  N8I87_RS38625 (N8I87_38625) - 8532808..8532954 (+) 147 Protein_7624 DinB family protein -
  N8I87_RS38630 (N8I87_38630) - 8533087..8534574 (+) 1488 WP_263215545.1 alpha/beta hydrolase -
  N8I87_RS38635 (N8I87_38635) dinR/lexA 8534680..8535351 (+) 672 WP_263215546.1 transcriptional repressor LexA Regulator
  N8I87_RS38640 (N8I87_38640) - 8535504..8536700 (+) 1197 WP_263215547.1 DUF1343 domain-containing protein -
  N8I87_RS38645 (N8I87_38645) - 8536746..8537726 (+) 981 WP_263215548.1 GNAT family N-acetyltransferase -
  N8I87_RS38650 (N8I87_38650) - 8537723..8539063 (+) 1341 WP_263215549.1 ABC transporter substrate-binding protein -
  N8I87_RS38655 (N8I87_38655) - 8539057..8540016 (+) 960 WP_263215550.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24344.73 Da        Isoelectric Point: 5.8692

>NTDB_id=637525 N8I87_RS38635 WP_263215546.1 8534680..8535351(+) (dinR/lexA) [Streptomyces sp. HUAS 15-9]
MENTAPARRGRPPGTRTAEGELTSRQSAIVRYITETVDRQGYPPSMREIGQAVNLASTSSVAYQLTVLERKGVLYRDPHR
PRAYQVRPSWAPDLGARSPAPVDVPLVGRIAAGAPLLAEEMIEDVYSLPRQIVGEGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDIVAALLEDEATVKVLRRQEGRVWLMPRNPAYEPIPGEQAQILGKVVGVLRRL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=637525 N8I87_RS38635 WP_263215546.1 8534680..8535351(+) (dinR/lexA) [Streptomyces sp. HUAS 15-9]
ATGGAGAACACCGCGCCCGCTCGCCGAGGCCGTCCCCCGGGGACCAGGACCGCTGAGGGGGAGCTGACGAGCCGCCAGTC
GGCCATCGTCCGCTACATCACGGAGACGGTCGACCGGCAGGGCTACCCTCCCTCGATGCGGGAGATCGGCCAGGCCGTGA
ATCTCGCCAGTACCTCCTCGGTGGCCTACCAGCTGACCGTCCTCGAACGCAAAGGCGTCCTCTACCGCGACCCGCACCGT
CCCCGCGCCTACCAGGTACGACCCTCGTGGGCGCCCGACCTGGGCGCCCGGAGCCCCGCACCGGTCGACGTGCCGCTCGT
GGGCCGGATCGCCGCCGGCGCGCCCCTGCTCGCCGAGGAGATGATCGAGGACGTCTACTCGCTGCCCCGCCAGATCGTGG
GGGAGGGCGACTTGTTCGCCCTGACGGTCTCCGGCGACAGCATGATCGACGCGGCGATCTGCGACGGGGACATCGTGACC
GTCCGGCGGCAGGACAGCGCAGACCACGGTGACATCGTCGCCGCGCTCCTGGAGGACGAGGCCACGGTCAAGGTGCTGCG
TCGGCAGGAGGGGCGCGTGTGGCTCATGCCCCGCAACCCCGCGTACGAGCCGATCCCCGGTGAACAGGCGCAGATCCTGG
GCAAGGTGGTGGGCGTCCTGCGGCGCCTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.335

91.031

0.404