Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LUW98_RS23020 Genome accession   NZ_CP089399
Coordinates   4890285..4890908 (-) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain Kox26     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4885285..4895908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW98_RS23005 (LUW98_23005) helD 4885521..4887575 (-) 2055 WP_202861996.1 DNA helicase IV -
  LUW98_RS23010 (LUW98_23010) - 4887698..4888144 (+) 447 WP_004100782.1 YccF domain-containing protein -
  LUW98_RS23015 (LUW98_23015) yccS 4888162..4890297 (+) 2136 WP_202861997.1 YccS family putative transporter -
  LUW98_RS23020 (LUW98_23020) sxy/tfoX 4890285..4890908 (-) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  LUW98_RS23025 (LUW98_23025) sulA 4891370..4891879 (+) 510 WP_026055887.1 SOS-induced cell division inhibitor SulA -
  LUW98_RS23030 (LUW98_23030) ompA 4892233..4893303 (+) 1071 WP_004100770.1 porin OmpA -
  LUW98_RS23035 (LUW98_23035) matP 4893414..4893866 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  LUW98_RS23040 (LUW98_23040) - 4894052..4895809 (+) 1758 WP_016808048.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=636779 LUW98_RS23020 WP_004100775.1 4890285..4890908(-) (sxy/tfoX) [Klebsiella oxytoca strain Kox26]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=636779 LUW98_RS23020 WP_004100775.1 4890285..4890908(-) (sxy/tfoX) [Klebsiella oxytoca strain Kox26]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGCCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493