Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N7980_RS17340 Genome accession   NZ_CP106671
Coordinates   3358691..3359821 (-) Length   376 a.a.
NCBI ID   WP_041851216.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3353691..3364821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS17295 (N7980_17295) cotJC 3353796..3354365 (-) 570 WP_003233850.1 spore coat protein CotJC -
  N7980_RS17300 (N7980_17300) cotJB 3354380..3354643 (-) 264 WP_003219491.1 spore coat protein CotJB -
  N7980_RS17305 (N7980_17305) cotJA 3354627..3354875 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  N7980_RS17310 (N7980_17310) yesF 3355022..3355870 (-) 849 WP_015715469.1 NAD-dependent epimerase/dehydratase family protein -
  N7980_RS17315 (N7980_17315) yesE 3355867..3356310 (-) 444 WP_015715468.1 nuclear transport factor 2 family protein -
  N7980_RS17320 (N7980_17320) yezE 3356390..3356974 (-) 585 WP_041851250.1 TetR/AcrR family transcriptional regulator -
  N7980_RS17325 (N7980_17325) - 3357087..3357515 (-) 429 WP_043940061.1 hypothetical protein -
  N7980_RS17330 (N7980_17330) yeeI 3357649..3358368 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  N7980_RS17335 (N7980_17335) phrH 3358528..3358701 (-) 174 WP_041851215.1 phosphatase RapH inhibitor PhrH -
  N7980_RS17340 (N7980_17340) rapC 3358691..3359821 (-) 1131 WP_041851216.1 response regulator aspartate phosphatase RapH Regulator
  N7980_RS17345 (N7980_17345) - 3359985..3361007 (-) 1023 WP_041851217.1 hypothetical protein -
  N7980_RS17350 (N7980_17350) yeeF 3361220..3363229 (+) 2010 WP_041851218.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  N7980_RS17355 (N7980_17355) atxF 3363249..3363704 (+) 456 WP_072173434.1 TIGR01741 family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43962.34 Da        Isoelectric Point: 6.3903

>NTDB_id=635397 N7980_RS17340 WP_041851216.1 3358691..3359821(-) (rapC) [Bacillus subtilis strain SRCM116301]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQRMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLESIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLGAALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAATVFESSCHFEQAAKFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=635397 N7980_RS17340 WP_041851216.1 3358691..3359821(-) (rapC) [Bacillus subtilis strain SRCM116301]
TTGAGTCAAGCCATACCGTCTTCGCGTGTCGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAGGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAATCGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGGGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAAATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGCAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCACTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTAAGTTTTACCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

39.257

100

0.394