Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   N7980_RS12980 Genome accession   NZ_CP106671
Coordinates   2542882..2543331 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM116301     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2537882..2548331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS12950 (N7980_12950) sepM 2537961..2538986 (-) 1026 WP_003245451.1 protease DdcP Regulator
  N7980_RS12955 (N7980_12955) ylbK 2538988..2539770 (-) 783 WP_021479345.1 patatin family protein -
  N7980_RS12960 (N7980_12960) spoVV 2539951..2541177 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  N7980_RS12965 (N7980_12965) coaD 2541188..2541673 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  N7980_RS12970 (N7980_12970) rsmD 2541678..2542232 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N7980_RS12975 (N7980_12975) ylbG 2542555..2542827 (-) 273 WP_009967171.1 YlbG family protein -
  N7980_RS12980 (N7980_12980) ylbF 2542882..2543331 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  N7980_RS12985 (N7980_12985) ylbE 2543447..2543686 (-) 240 WP_003232231.1 YlbE-like family protein -
  N7980_RS12990 (N7980_12990) ylbD 2543702..2544100 (-) 399 WP_003232233.1 YlbD family protein -
  N7980_RS12995 (N7980_12995) ylbC 2544332..2545372 (-) 1041 WP_041850862.1 CAP domain-containing protein -
  N7980_RS13000 (N7980_13000) ylbB 2545456..2545902 (-) 447 WP_003221362.1 CBS domain-containing protein -
  N7980_RS13005 (N7980_13005) ylbA 2546042..2546404 (+) 363 WP_003232238.1 YugN family protein -
  N7980_RS13010 (N7980_13010) ctaG 2546436..2547329 (-) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  N7980_RS13015 (N7980_13015) ctaF 2547356..2547688 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  N7980_RS13020 (N7980_13020) ctaE 2547691..2548314 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=635362 N7980_RS12980 WP_003221370.1 2542882..2543331(-) (ylbF) [Bacillus subtilis strain SRCM116301]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=635362 N7980_RS12980 WP_003221370.1 2542882..2543331(-) (ylbF) [Bacillus subtilis strain SRCM116301]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1