Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LTK15_RS03580 Genome accession   NZ_CP089154
Coordinates   648273..648719 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SaCF36     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643273..653719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK15_RS03545 (LTK15_03545) - 643767..643970 (+) 204 WP_000087561.1 YqgQ family protein -
  LTK15_RS03550 (LTK15_03550) - 643967..644953 (+) 987 WP_000161307.1 ROK family glucokinase -
  LTK15_RS03555 (LTK15_03555) - 644953..645282 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LTK15_RS03560 (LTK15_03560) - 645279..645902 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  LTK15_RS03565 (LTK15_03565) comGA 645954..646928 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LTK15_RS03570 (LTK15_03570) comGB 646900..647970 (+) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  LTK15_RS03575 (LTK15_03575) comGC 647984..648295 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  LTK15_RS03580 (LTK15_03580) comGD 648273..648719 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LTK15_RS03585 (LTK15_03585) comGE 648706..649005 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LTK15_RS03590 (LTK15_03590) comGF 648923..649420 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  LTK15_RS03595 (LTK15_03595) - 649517..649663 (+) 147 WP_001789879.1 hypothetical protein -
  LTK15_RS03600 (LTK15_03600) - 649653..650177 (+) 525 WP_033858309.1 shikimate kinase -
  LTK15_RS03605 (LTK15_03605) gcvT 650336..651427 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  LTK15_RS03610 (LTK15_03610) gcvPA 651447..652793 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=635362 LTK15_RS03580 WP_001796473.1 648273..648719(+) (comGD) [Staphylococcus aureus strain UNC_SaCF36]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=635362 LTK15_RS03580 WP_001796473.1 648273..648719(+) (comGD) [Staphylococcus aureus strain UNC_SaCF36]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993