Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   CSB63_RS03760 Genome accession   NZ_CP089060
Coordinates   674527..674820 (+) Length   97 a.a.
NCBI ID   WP_134973176.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 669527..679820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS03745 (CSB63_0731) - 671152..672828 (+) 1677 WP_246752691.1 GmrSD restriction endonuclease domain-containing protein -
  CSB63_RS03750 (CSB63_0732) - 672821..674005 (+) 1185 WP_134973175.1 restriction endonuclease subunit S -
  CSB63_RS03755 (CSB63_0733) - 674219..674537 (+) 319 Protein_674 type II toxin-antitoxin system RelE/ParE family toxin -
  CSB63_RS03760 (CSB63_0734) HI0659 674527..674820 (+) 294 WP_134973176.1 helix-turn-helix domain-containing protein Machinery gene
  CSB63_RS03765 (CSB63_0735) - 674842..676443 (+) 1602 WP_134973177.1 type I restriction-modification system subunit M -
  CSB63_RS03770 - 676521..677408 (+) 888 Protein_677 Rpn family recombination-promoting nuclease/putative transposase -
  CSB63_RS03775 (CSB63_0738) - 677670..678671 (+) 1002 WP_134973556.1 DNA/RNA non-specific endonuclease -
  CSB63_RS03780 (CSB63_0739) - 678824..679384 (+) 561 WP_134973179.1 LemA family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10774.49 Da        Isoelectric Point: 5.8962

>NTDB_id=634866 CSB63_RS03760 WP_134973176.1 674527..674820(+) (HI0659) [Streptococcus thermophilus strain CH8]
MKNSAIGSNWKDVRSELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQERV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=634866 CSB63_RS03760 WP_134973176.1 674527..674820(+) (HI0659) [Streptococcus thermophilus strain CH8]
ATGAAGAATAGTGCCATCGGTAGCAATTGGAAAGATGTGAGATCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TCTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACATGAAAAGGGCATTAGTCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGATACGGTTTTGAAAGTCTTA
GCTAGTCTGGGCAAGACTCTCGCTGTCGTCCCACTGGAACAAGAAAGGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567