Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   N8A75_RS15135 Genome accession   NZ_CP104878
Coordinates   2745479..2746174 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain 4ZT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2740479..2751174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS15110 (N8A75_15110) minD 2741415..2742221 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  N8A75_RS15115 (N8A75_15115) minC 2742223..2742903 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  N8A75_RS15120 (N8A75_15120) mreD 2742956..2743474 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  N8A75_RS15125 (N8A75_15125) mreC 2743471..2744343 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  N8A75_RS15130 (N8A75_15130) mreB 2744374..2745387 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  N8A75_RS15135 (N8A75_15135) ysxA/radC 2745479..2746174 (-) 696 WP_003246034.1 RadC family protein Machinery gene
  N8A75_RS15140 (N8A75_15140) maf 2746211..2746780 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  N8A75_RS15145 (N8A75_15145) spoIIB 2746933..2747931 (-) 999 WP_024572905.1 stage II sporulation protein SpoIIB -
  N8A75_RS15150 (N8A75_15150) comC 2748065..2748811 (-) 747 WP_080474433.1 prepilin peptidase Machinery gene
  N8A75_RS15155 (N8A75_15155) folC 2748952..2750244 (-) 1293 WP_041339279.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=634570 N8A75_RS15135 WP_003246034.1 2745479..2746174(-) (ysxA/radC) [Bacillus subtilis strain 4ZT]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=634570 N8A75_RS15135 WP_003246034.1 2745479..2746174(-) (ysxA/radC) [Bacillus subtilis strain 4ZT]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCACCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGAAGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424