Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   T256_RS07215 Genome accession   NC_022780
Coordinates   1435075..1436445 (-) Length   456 a.a.
NCBI ID   WP_023440691.1    Uniprot ID   -
Organism   Pediococcus pentosaceus SL4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1430075..1441445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T256_RS07195 (T256_07405) - 1430371..1430784 (-) 414 WP_023440688.1 Mini-ribonuclease 3 -
  T256_RS07200 (T256_07410) cysS 1430777..1432189 (-) 1413 WP_023440689.1 cysteine--tRNA ligase -
  T256_RS07205 (T256_07415) gltX 1432370..1433857 (-) 1488 WP_023440690.1 glutamate--tRNA ligase -
  T256_RS07210 (T256_07420) - 1433927..1435057 (-) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  T256_RS07215 (T256_07425) radA 1435075..1436445 (-) 1371 WP_023440691.1 DNA repair protein RadA Machinery gene
  T256_RS07220 (T256_07430) - 1436545..1437078 (-) 534 WP_002833247.1 dUTP diphosphatase -
  T256_RS07225 (T256_07435) - 1437215..1437544 (+) 330 WP_023440692.1 GNAT family N-acetyltransferase -
  T256_RS07230 (T256_07440) rpiA 1437548..1438234 (+) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  T256_RS07235 (T256_07445) - 1438304..1439650 (+) 1347 WP_023440693.1 aminopeptidase C -
  T256_RS07240 (T256_07450) - 1439726..1440106 (-) 381 WP_002833243.1 winged helix-turn-helix transcriptional regulator -
  T256_RS07245 (T256_07455) - 1440170..1441357 (-) 1188 WP_023440694.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50432.86 Da        Isoelectric Point: 6.5172

>NTDB_id=63418 T256_RS07215 WP_023440691.1 1435075..1436445(-) (radA) [Pediococcus pentosaceus SL4]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTEMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=63418 T256_RS07215 WP_023440691.1 1435075..1436445(-) (radA) [Pediococcus pentosaceus SL4]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGACGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAACTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGGGTTAAAACAGAGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGAGTAGTGGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGTAAGTCGACCCTATT
GTTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAACAGTGAACGTTTTTACTTGTACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCCGAATTAATGCAGATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTCGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTAATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATTGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGGATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
GAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.033

99.781

0.669
  radA Streptococcus mitis SK321

67.033

99.781

0.669
  radA Streptococcus mitis NCTC 12261

67.033

99.781

0.669
  radA Streptococcus pneumoniae TIGR4

67.033

99.781

0.669
  radA Streptococcus pneumoniae D39

67.033

99.781

0.669
  radA Streptococcus pneumoniae R6

67.033

99.781

0.669
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651

Multiple sequence alignment