Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N6G78_RS12915 Genome accession   NZ_CP104855
Coordinates   2492453..2493580 (-) Length   375 a.a.
NCBI ID   WP_015483467.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2487453..2498580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS12875 (N6G78_12875) - 2487960..2488348 (+) 389 Protein_2489 sigma-70 family RNA polymerase sigma factor -
  N6G78_RS12880 (N6G78_12880) - 2488387..2488512 (-) 126 Protein_2490 recombinase -
  N6G78_RS12885 (N6G78_12885) - 2488509..2488631 (-) 123 WP_015483462.1 hypothetical protein -
  N6G78_RS12890 (N6G78_12890) yrkL 2489088..2489612 (-) 525 WP_015384155.1 NAD(P)H-dependent oxidoreductase -
  N6G78_RS12895 (N6G78_12895) yrkK 2489859..2490335 (-) 477 WP_015483463.1 HXXEE domain-containing protein -
  N6G78_RS12900 (N6G78_12900) - 2490642..2491061 (+) 420 WP_015483464.1 MarR family winged helix-turn-helix transcriptional regulator -
  N6G78_RS12905 (N6G78_12905) - 2491082..2491474 (+) 393 WP_046340253.1 rhodanese-like domain-containing protein -
  N6G78_RS12910 (N6G78_12910) - 2491479..2491904 (+) 426 WP_046340254.1 EVE domain-containing protein -
  N6G78_RS12915 (N6G78_12915) rapC 2492453..2493580 (-) 1128 WP_015483467.1 Rap family tetratricopeptide repeat protein Regulator
  N6G78_RS12920 (N6G78_12920) - 2493766..2495658 (+) 1893 WP_015483468.1 T7SS effector LXG polymorphic toxin -
  N6G78_RS12925 (N6G78_12925) cdiI 2495680..2496039 (+) 360 WP_015384160.1 ribonuclease toxin immunity protein CdiI -
  N6G78_RS12930 (N6G78_12930) - 2496092..2496396 (+) 305 Protein_2500 tRNA-Val4 -
  N6G78_RS12935 (N6G78_12935) - 2496733..2496918 (+) 186 WP_015384162.1 SMI1/KNR4 family protein -
  N6G78_RS12940 (N6G78_12940) - 2497164..2497886 (-) 723 WP_015384163.1 NPP1 family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44180.37 Da        Isoelectric Point: 5.6714

>NTDB_id=633808 N6G78_RS12915 WP_015483467.1 2492453..2493580(-) (rapC) [Bacillus subtilis strain TY-1]
MNLVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=633808 N6G78_RS12915 WP_015483467.1 2492453..2493580(-) (rapC) [Bacillus subtilis strain TY-1]
GTGAATCTGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTATTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCAGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAGAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(259-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(195-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

100

0.445
  rapF Bacillus subtilis subsp. subtilis str. 168

39.683

100

0.4