Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LQF05_RS13945 Genome accession   NZ_CP088004
Coordinates   3038216..3039262 (-) Length   348 a.a.
NCBI ID   WP_014596281.1    Uniprot ID   A0A137YBS7
Organism   Stutzerimonas stutzeri strain SB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3033216..3044262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF05_RS13930 (LQF05_13905) - 3035053..3036462 (+) 1410 WP_014596282.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  LQF05_RS13935 (LQF05_13910) - 3036575..3037666 (+) 1092 WP_011912673.1 LOG family protein -
  LQF05_RS13940 (LQF05_13915) recX 3037743..3038210 (-) 468 WP_013982303.1 recombination regulator RecX -
  LQF05_RS13945 (LQF05_13920) recA 3038216..3039262 (-) 1047 WP_014596281.1 recombinase RecA Machinery gene
  LQF05_RS13950 (LQF05_13925) - 3039346..3039843 (-) 498 WP_053527536.1 CinA family protein -
  LQF05_RS13955 (LQF05_13930) - 3039951..3041063 (-) 1113 WP_048328793.1 acyltransferase family protein -
  LQF05_RS13960 (LQF05_13935) mutS 3041531..3044110 (+) 2580 WP_270066674.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37134.57 Da        Isoelectric Point: 5.5400

>NTDB_id=632300 LQF05_RS13945 WP_014596281.1 3038216..3039262(-) (recA) [Stutzerimonas stutzeri strain SB-1]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKFLEDNPEIGREIEQ
QIRDKLLVVSGGSSKANVVSEDLVDADL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=632300 LQF05_RS13945 WP_014596281.1 3038216..3039262(-) (recA) [Stutzerimonas stutzeri strain SB-1]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCAGCCCTGGGCCAGATTGAAAAGCAGTTCGGCAAGGGTGCAGTGATGCG
CATGGGCGATCACGATCGCCAGGCGATTCCGGCCATCTCCACCGGCTCGCTGGGTCTGGACATCGCGCTGGGCATTGGCG
GCCTGCCGAAGGGCCGGATCGTCGAGATCTACGGTCCGGAATCGTCCGGTAAGACCACTCTGACGCTGTCGGTGATTGCC
GAAGCGCAGAAGATGGGCGCCACCTGTGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGGACTACGCCGGCAAGCTGGG
CGTGAATGTCGACGATCTGCTGGTTTCGCAGCCGGATACCGGCGAACAGGCTCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTCGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGTGAT
GCCCACGTCGGCCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACAGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTGGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTCGGCGTGCAGCAGGGGCTGGTGGAGAAGTCCGGCGCCTGGTACGCCTACAAAG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTTCCTGGAAGACAACCCGGAAATCGGTCGCGAAATCGAACAG
CAGATCCGCGACAAGCTGCTGGTGGTTTCCGGCGGTAGCAGCAAGGCGAACGTGGTCAGCGAAGACCTGGTCGACGCCGA
TCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A137YBS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

94.54

100

0.945
  recA Acinetobacter baylyi ADP1

73.913

99.138

0.733
  recA Acinetobacter baumannii D1279779

75.988

94.54

0.718
  recA Vibrio cholerae strain A1552

74.618

93.966

0.701
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

93.966

0.701
  recA Ralstonia pseudosolanacearum GMI1000

73.171

94.253

0.69
  recA Glaesserella parasuis strain SC1401

73.765

93.103

0.687
  recA Neisseria gonorrhoeae MS11

71.605

93.103

0.667
  recA Neisseria gonorrhoeae MS11

71.605

93.103

0.667
  recA Neisseria gonorrhoeae strain FA1090

71.605

93.103

0.667
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

93.966

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

95.977

0.595
  recA Helicobacter pylori strain NCTC11637

62.997

93.966

0.592
  recA Helicobacter pylori 26695

62.385

93.966

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.241

0.58
  recA Streptococcus mutans UA159

60

93.391

0.56
  recA Streptococcus pneumoniae R6

58.61

95.115

0.557
  recA Streptococcus pneumoniae TIGR4

58.61

95.115

0.557
  recA Streptococcus pneumoniae D39

58.61

95.115

0.557
  recA Streptococcus mitis NCTC 12261

58.61

95.115

0.557
  recA Streptococcus pneumoniae Rx1

58.61

95.115

0.557
  recA Streptococcus mitis SK321

58.308

95.115

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.241

0.552
  recA Streptococcus pyogenes NZ131

58.232

94.253

0.549
  recA Lactococcus lactis subsp. cremoris KW2

57.276

92.816

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

93.678

0.523